Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01495 ATGGGTCCGCGGTATGCACCACCAGATCCGACCCTCCCAAAACCATGGAAGGGTCTTGTGGATGGCAAGACCGGTTATCTTTACTTTTGGAATCCTGAGACCAATGTTACCCAGTACGAGAGGCCCGCAAGCTCAGCTGCCCCGCCAAAGGCTTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACATATCTCTCAAGGGTCATTGCGTGGTCGTAGTCCCGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGATCAAATGAAGCTGGATCACGGAATAATCAGAGTTCCAAAGGTGGAAGTTACAGTTCTCATAGTGTGCCAACTGGAACAAATGCTGCTGCCAGTGTTAATTACTCTGTCAAAGGTCCCGGGGTTTCGGATGCTGCAGCTGGACTATCTCCTGAGTCGTATCGAAATCGGCATGAAATAACTGTGACTGGAGACAATGTGCCTCCACCTCTTACATCATTTGGGTCTACTGGCTTTCCACCGGAGCTTTTGAGAGAGGTACAAAATGCTGGTTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCAAAAACAGGCTCTGGGAAAACCTTGGGATATTTAATTCCAGCATTTATTCACCTCAAGCGCTGTGGCAATAACTCCAAAATGGGCCCCACTGCGTTGGTACTTTCACCAACAAGGGAACTGGCAACACAAATACAAGATGAGGCTGTGAAGTTTGGGAAATCGTCGAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCGAAGGGTCCTCAACTCAGAGACATTGACCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCCTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTCTCTTACTTGGTGCTAGATGAGGCAGACCGGATGCTGGATATGGGTTTTGAACCTCAAATCAGGAAAATTGTGAATGAGGTTCCTAATCGCAGGCAAACACTCATGTTCACTGCAACATGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTACTGGTCAAACCTGTCCAGGTGAACATTGGCAATGTAGACGAGCTTGTTGCTAACAAGTCCATTACTCAGCATGTTGAAGTATTGCCACTGATGGAGAAACAGAGACGTCTGGAACATATTTTACGGTCACAGGATCAAGGATCAAAAATAATTATTTTTTGTTCTACCAAGAAAATGTGTGATCAACTAGCTCGTAATCTGACACGTCAATTCGGAGCTGCTGCTATCCATGGGGATAAATCCCAGGCAGAGAGGGATCATGTGTTGAGTCAGTTTCGAACTGGGAGGTCACCTGTTCTTGTAGCCACAGATGTTGCTGCCCGTGGACTTGATATCAAGGACATTAGGGTGGTTGTCAATTATGACTTCCCCACAGGGGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGGAGAGCTGGAGCCACTGGGCTTGCTTACACTTTCTTTGGTGACCAGGATGCAAAATATGCTACAGATCTCATCAAAGTTTTGGAAGGTGCAAACCAGAAAGTACCTCCAGAACTCCGTGATATGTCATCACGGGGTGGTGGCGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGACAGGGTGGACGAGGTGGACGAGGTGATTCTGGATATGGTGGAAGGAATAATGACTCCGGATATGGTGGAAGAGGTGGTGATTCAAACTATGGAGGAAGGGGGACAGCTTCTTCTGGCAGAGGAGGCCGTGGTTTTGACTATGACTCTCAGAGGAATGACCGGGGTCTGAGTCCGGACAAGGGATCTAAATGGAGTGATCGCTACAAAAGCGTCAACCGTGAACGTAGTCGTAGCCCTGACAGGGCTGCACTATCTCAGCATTCCCAAAGCAGCTTTCACAAGTCAATGATGGAGCGTGGTGGATGGGGGGAAAGTGATCGCAATAAGAGCGCTAACAGGGATCGGAGCCGCAGTCCTAGCCCCTACAGACAGGAGAGGACCCCAGCAGCAGTTCGTGAACGATCCCCAGTTCACAGTTTTCATCGATCAATGATGGCACAAGGTCAATCTTCCCCACGGCAGCGTGCACGCAGTCCTTACCGAAACTCATCTCCCTCCTCCCAGGGGGGTGGTAGGTCTAATAATAGTCCTCCAAAAGAGTGGGGAGGGTCTTCGGGTGATGGAAGGTTTGGTGGATCTTACAATGGAGAGGTGGAGGAAGGGATGATTCCAGAGGAAGAAGGAATGATAGGTCAAGGTGATTAG 2304 0.4865 MGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPASSAAPPKASSVPSSSVQVQHISQGSLRGRSPDFSDRYDRNGSGGSNEAGSRNNQSSKGGSYSSHSVPTGTNAAASVNYSVKGPGVSDAAAGLSPESYRNRHEITVTGDNVPPPLTSFGSTGFPPELLREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFIHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPLMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYATDLIKVLEGANQKVPPELRDMSSRGGGGMGRSRRWGSGGQGGRGGRGDSGYGGRNNDSGYGGRGGDSNYGGRGTASSGRGGRGFDYDSQRNDRGLSPDKGSKWSDRYKSVNRERSRSPDRAALSQHSQSSFHKSMMERGGWGESDRNKSANRDRSRSPSPYRQERTPAAVRERSPVHSFHRSMMAQGQSSPRQRARSPYRNSSPSSQGGGRSNNSPPKEWGGSSGDGRFGGSYNGEVEEGMIPEEEGMIGQGD* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01495 767 FunFam probable ATP-dependent RNA helicase DDX17 130 366 - -
Lapu4g01495 767 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 158 186 IPR014014 GO:0003724
Lapu4g01495 767 Pfam DEAD/DEAH box helicase 182 352 IPR011545 GO:0003676|GO:0005524
Lapu4g01495 767 MobiDBLite consensus disorder prediction 49 72 - -
Lapu4g01495 767 Pfam Helicase conserved C-terminal domain 389 497 IPR001650 -
Lapu4g01495 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 514 IPR027417 -
Lapu4g01495 767 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 189 363 IPR014001 -
Lapu4g01495 767 MobiDBLite consensus disorder prediction 695 734 - -
Lapu4g01495 767 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 392 536 IPR001650 -
Lapu4g01495 767 FunFam ATP-dependent RNA helicase RhlB 367 539 - -
Lapu4g01495 767 Gene3D - 8 54 - -
Lapu4g01495 767 SMART helicmild6 417 497 IPR001650 -
Lapu4g01495 767 Gene3D - 135 367 IPR027417 -
Lapu4g01495 767 MobiDBLite consensus disorder prediction 82 112 - -
Lapu4g01495 767 Pfam WW domain 12 42 IPR001202 GO:0005515
Lapu4g01495 767 SMART ultradead3 177 380 IPR014001 -
Lapu4g01495 767 MobiDBLite consensus disorder prediction 40 112 - -
Lapu4g01495 767 SUPERFAMILY WW domain 4 43 IPR036020 GO:0005515
Lapu4g01495 767 Gene3D - 368 538 IPR027417 -
Lapu4g01495 767 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 109 536 - -
Lapu4g01495 767 ProSitePatterns WW/rsp5/WWP domain signature. 16 42 IPR001202 GO:0005515
Lapu4g01495 767 ProSiteProfiles WW/rsp5/WWP domain profile. 10 44 IPR001202 GO:0005515
Lapu4g01495 767 CDD SF2_C_DEAD 377 506 - -
Lapu4g01495 767 MobiDBLite consensus disorder prediction 528 767 - -
Lapu4g01495 767 SMART ww_5 11 44 IPR001202 GO:0005515
Lapu4g01495 767 MobiDBLite consensus disorder prediction 652 692 - -
Lapu4g01495 767 CDD WW 13 42 IPR001202 GO:0005515
Lapu4g01495 767 MobiDBLite consensus disorder prediction 599 634 - -
Lapu4g01495 767 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 309 317 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01495 Lapu-Chr4 32128031 32134078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01495 156 535 Eukaryotic Initiation Factors Gene Family AT3G19760 33.506 4.63e-66 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01495 K12823 - gmx:100816455 1156.74