Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu4g01490 | ATGGACAAAAAACCATGCAACTCATCATCTCATGATCCTGAAGTGAGAAAGGGACCATGGACCATGGAAGAAGACTTGATCTTGATCAACTATATTGCTAATCACGGTGAAGGTGTTTGGAACTCTCTAGCCAAAGCTTCTGGTCTTAAACGTACGGGAAAAAGTTGTCGATTGCGTTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGGAATATTACAACCGAAGAACAGCTTTTGATCTTTGAACTTCATGCAAAGTGGGGTAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGATAATGAGATCAAGAACTTTTGGAGAACAAGAATCCAGAAGCACATGAAGCAAGCTGAGAATTCACAACTACTGGGTAATACTACTAATAATATTTCAGAGAGAAATGATGATGATCATCATCATCATCAAGCAAGCTCTAGCACAAGCCTAATCTCCAACATGGCACACCAAATTGAGAATTACTCCACACCCTCATATCAAGAAACTTTGGAGCCATTTCCACATTTCTCTGCAATCACTGATCAATCAAGTTCCTGCAACAATCACAGCATCAACAGCAACACCAACTACTGGAACATAGAGGATTTCTGGTCTATGCAATTGCTCAATGGGGATTGA | 651 | 0.4055 | MDKKPCNSSSHDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITTEEQLLIFELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHMKQAENSQLLGNTTNNISERNDDDHHHHQASSSTSLISNMAHQIENYSTPSYQETLEPFPHFSAITDQSSSCNNHSINSNTNYWNIEDFWSMQLLNGD* | 217 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu4g01490 | 216 | SMART | sant | 16 | 66 | IPR001005 | - | |
| Lapu4g01490 | 216 | SMART | sant | 69 | 117 | IPR001005 | - | |
| Lapu4g01490 | 216 | ProSiteProfiles | Myb-like domain profile. | 65 | 115 | IPR001005 | - | |
| Lapu4g01490 | 216 | CDD | SANT | 74 | 113 | IPR001005 | - | |
| Lapu4g01490 | 216 | PANTHER | MYB TRANSCRIPTION FACTOR-RELATED-RELATED | 13 | 184 | IPR044676 | GO:0003700|GO:0006355|GO:0043565 | |
| Lapu4g01490 | 216 | Gene3D | - | 72 | 148 | - | - | |
| Lapu4g01490 | 216 | MobiDBLite | consensus disorder prediction | 124 | 152 | - | - | |
| Lapu4g01490 | 216 | FunFam | Myb transcription factor | 17 | 69 | - | - | |
| Lapu4g01490 | 216 | CDD | SANT | 19 | 64 | IPR001005 | - | |
| Lapu4g01490 | 216 | Pfam | Myb-like DNA-binding domain | 70 | 113 | IPR001005 | - | |
| Lapu4g01490 | 216 | Pfam | Myb-like DNA-binding domain | 17 | 64 | IPR001005 | - | |
| Lapu4g01490 | 216 | SUPERFAMILY | Homeodomain-like | 14 | 111 | IPR009057 | - | |
| Lapu4g01490 | 216 | FunFam | Myb-related protein 305 | 74 | 153 | - | - | |
| Lapu4g01490 | 216 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 12 | 64 | IPR017930 | - | |
| Lapu4g01490 | 216 | Gene3D | - | 17 | 69 | - | - | |
| Lapu4g01490 | 216 | ProSiteProfiles | Myb-like domain profile. | 12 | 64 | IPR001005 | - | |
| Lapu4g01490 | 216 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 65 | 119 | IPR017930 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu4g01490 | Lapu-Chr4 | 32068060 | 32073508 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu4g01490 | 15 | 216 | MYB Transcription Factor Family | AT3G01530 | 61.386 | 2.46e-80 | 237 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Lapu4g01490 | Myb_DNA-binding | 2.3e-14 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu4g01490 | K09422 | - | gmx:100305972 | 343.584 |