Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01486 ATGGAGCATGTTTTGGAAAAAAGATTCCCTCTTAATGCAGAAGACTACAAGTTATATGAAGAAGTTGGTGAAGGCGTTAGTGCCTCTGTATACAGGGCTCTTTGTGTTCCACTCAATGAGATAGTTGCTATCAAGGTTCTCGATCTAGAGAAATGCAATAATGATTTGGATGGCATTCGAAGAGAGGTACAGACAATGAGCTTGATTGATCATCCAAATGTTTTACAGGCACATTGCTCTTTTACTACTGGACACAATCTATGGGTTGTAATGCCATACATGGCAGGGGGGTCTTGCCTTCATATAATGAAATCTGCCTATCCGGAGGGTTTTGAAGAGCCTGTTATTGCTACTTTATTGCATGAAGTTCTCAAAGCTCTTGTCTATCTTCATGCCCATGGTCACATACATAGAGATGTTAAGGCTGGGAATATTCTGCTTGATTCTAATGGTGCAGTCAAACTAGCTGACTTTGGAGTGTCGGCATGTATGTTTGATACTGGAGATAGGCAACGTTCAAGAAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCAGAAGTCATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCTATGAAAGTTTTGCTTATGACTTTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGGCTTTCAAGGAGTTGGTTGCCACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCAAGTTCAGAAAAGCTTTTAAAGCACCACTTCTTTAAACATGCACGTGCCAGCAAATATCTAGCTCGTACCATTCTGGATGGCCTTGCTCCTTTAGGAGATCGATTTAGAACTCTGAAGGCTAAAGAGGCGGATTTATTGGTGCAGAACAAGGCCCTTTATGAGGATAAGGATCAATTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAGGATTTAAAAAGCCAAGCTGCTCTTATTCAAGATGATGACATACCTAATGTAGATGAGCCACAAAAGGATAATAAGCAAAAAGACAGATCGGATGACTTCAGGATACCCGCAGAGGGGTTATCATCTGTAACAGCTAATCATTCAGATGATGCACCCAGTCAGAACAAGGAGGATGGATTCAATAATCTTCAGGATTTGGAGGGTTCGCTTGCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGATGTTTTGATATGTGTGAGGATGACGTTAATAACAGTCCAAGAGATCTGGATCATGATTATGGAAATGAAAGTTCTGGGCCAAGTTCTTCATTACAACAAAACGCCAACAATCAGCAAAAGAAGTTTTCGAGTGGTTCTTTGCTACCTGATAATTTTCTTTTTCCCAAAAAGGTTGTTACTGATGGGGACAGGGATTATCTACAAACAAAGTATTCTTCCGAGAGGAATCATAGTGGTCCATTACAATATCGACAGAAGAGAGATACCAACAACCTTCCATTGGTTGATGACACATCAGATGGAGCATTTGTCCAGCGTAGGGGGCGGTTTAAGGTCACATCAGCAGATCTCAGTCCAATGGGTCCTTCAAACAGTGCTTCTGGCCCAGTTGTTAGTCCTACCAGTCCACCAAATCAAAATTTCATGGCCGGTGCTATTCTTCCATCGCTGCAGTGCATCTTGCAACAGAATGGCTTGCAGAGGGAAGAGATTATAAAATTAATAAAGTATGCCGAGCAATCTTCTGGTAAGAATGCAGAATCAGTGGAAGCAGGGGCAGTTGATAGTTTGCAGGTACCTACAACAACTAGGGAGAGAGAGCTGCATTTTCAGGTGATTCAACTCCAACAGAGCATTGGAAGCCTTGTTGAGGAATTACAAAGACAAAAGATGAAAAATGTTCAGTTAGAGAAACAGTTGAGCAGTATGATTAACAAAGTGGAGAAGTGA 2004 0.4102 MEHVLEKRFPLNAEDYKLYEEVGEGVSASVYRALCVPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLQAHCSFTTGHNLWVVMPYMAGGSCLHIMKSAYPEGFEEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAFKELVATCLVKDPKKRPSSEKLLKHHFFKHARASKYLARTILDGLAPLGDRFRTLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNVDEPQKDNKQKDRSDDFRIPAEGLSSVTANHSDDAPSQNKEDGFNNLQDLEGSLASFPSKPLQALKGCFDMCEDDVNNSPRDLDHDYGNESSGPSSSLQQNANNQQKKFSSGSLLPDNFLFPKKVVTDGDRDYLQTKYSSERNHSGPLQYRQKRDTNNLPLVDDTSDGAFVQRRGRFKVTSADLSPMGPSNSASGPVVSPTSPPNQNFMAGAILPSLQCILQQNGLQREEIIKLIKYAEQSSGKNAESVEAGAVDSLQVPTTTRERELHFQVIQLQQSIGSLVEELQRQKMKNVQLEKQLSSMINKVEK* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01486 667 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01486 667 MobiDBLite consensus disorder prediction 383 404 - -
Lapu4g01486 667 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Lapu4g01486 667 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Lapu4g01486 667 MobiDBLite consensus disorder prediction 542 559 - -
Lapu4g01486 667 MobiDBLite consensus disorder prediction 447 471 - -
Lapu4g01486 667 SUPERFAMILY Protein kinase-like (PK-like) 13 278 IPR011009 -
Lapu4g01486 667 MobiDBLite consensus disorder prediction 357 377 - -
Lapu4g01486 667 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Lapu4g01486 667 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01486 667 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01486 667 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Lapu4g01486 667 MobiDBLite consensus disorder prediction 538 559 - -
Lapu4g01486 667 Coils Coil 637 664 - -
Lapu4g01486 667 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 7 648 IPR047173 GO:0043539
Lapu4g01486 667 MobiDBLite consensus disorder prediction 497 521 - -
Lapu4g01486 667 MobiDBLite consensus disorder prediction 435 472 - -
Lapu4g01486 667 Gene3D Transferase(Phosphotransferase) domain 1 97 314 - -
Lapu4g01486 667 MobiDBLite consensus disorder prediction 494 525 - -
Lapu4g01486 667 MobiDBLite consensus disorder prediction 352 404 - -
Lapu4g01486 667 CDD STKc_OSR1_SPAK 14 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01486 Lapu-Chr4 32005393 32018312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01486 1 664 MAP Kinase Kinase Kinase Kinase AT5G14720 66.376 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Lapu4g01486 Pkinase 2.9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01486 K08835 - gmx:100784402 1217.99