Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01460 ATGGAGTCTGGACTGCTTTTCTTTGATGCCTGTGCTTCTCGCGGGAACACCAACATGCTCTTCCTCGGCAACACTGAACTCGCTTTTCGAGGGAGATCGATGATGAGCTTGGAGGAAGCCTCAAAGAGGCGACCTTTCTTCACCTCACCGGATGAACTGTATGATGAAGAGTATTATGAGAAGCAGATGCCGGAGAAGAAGCATCGCCTCAGTTCTGAACAGGTCCAACTGTTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCTGATAGGAAGACCCAGTTGGCTAAGAAACTGGGATTGCAACCAAGGCAAGTGGCTGTGTGGTTTCAGAACCGCAGGGCTCGATGGAAGACCAAACAGCTTGAAAGGGATTTTGATGTTCTCAAGTCTTCATACGATACCCTACTTTCATCCTATGATTCACTTATGAAGGAGAATGAGAAACTCAAATCTGAGGTGGTATCCTTAAATGAGAAGCTTCAAGTTCAAGCTAAAGAGGTGCCTGAGGAACCATTATATGACAAGAAAGTTGATCCACTTCCAATAGAAGATATAGCTTCAATTTTCAGCACAAGGGTGGAGGACCACCAGAGTAGTGGGTCTGTTGGGAGTGCGGTGGTGGATGAGGATAGTCCACAGCTGGTCGTTGACAGTGTTGATTCACACTTTCCAGCTGACAACTATGGTGGATGTGTGGGCCCAGTTGAAAGAGTTCAGTCAGAGGAGGAGGATGGGAGTGATGATGGGAGGAGTTACATGGACGTGTTTGTGGTATCTGAAACTGAGAACCAAAACCATGAGGAAGGAGAGGCATTGGGTTGGTGGCCCAATATGAATATGTATTATGTTGGATAA 861 0.4669 MESGLLFFDACASRGNTNMLFLGNTELAFRGRSMMSLEEASKRRPFFTSPDELYDEEYYEKQMPEKKHRLSSEQVQLLEKSFEEENKLEPDRKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDFDVLKSSYDTLLSSYDSLMKENEKLKSEVVSLNEKLQVQAKEVPEEPLYDKKVDPLPIEDIASIFSTRVEDHQSSGSVGSAVVDEDSPQLVVDSVDSHFPADNYGGCVGPVERVQSEEEDGSDDGRSYMDVFVVSETENQNHEEGEALGWWPNMNMYYVG* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01460 286 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 52 213 IPR045224 GO:0003700
Lapu4g01460 286 MobiDBLite consensus disorder prediction 232 252 - -
Lapu4g01460 286 SMART HOX_1 63 125 IPR001356 GO:0003677
Lapu4g01460 286 Pfam Homeobox associated leucine zipper 121 163 IPR003106 GO:0006355|GO:0043565
Lapu4g01460 286 FunFam Homeobox-leucine zipper protein HAT5 59 123 - -
Lapu4g01460 286 Pfam Homeodomain 66 119 IPR001356 GO:0003677
Lapu4g01460 286 SUPERFAMILY Homeodomain-like 53 123 IPR009057 -
Lapu4g01460 286 Coils Coil 134 168 - -
Lapu4g01460 286 CDD homeodomain 66 122 IPR001356 GO:0003677
Lapu4g01460 286 PRINTS Lambda-repressor HTH signature 101 117 IPR000047 GO:0003677
Lapu4g01460 286 PRINTS Lambda-repressor HTH signature 92 101 IPR000047 GO:0003677
Lapu4g01460 286 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Lapu4g01460 286 Gene3D - 59 128 - -
Lapu4g01460 286 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01460 Lapu-Chr4 31764543 31768688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01460 1 277 Homeobox Transcription Factor Family AT3G01470 56.184 2.24e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu4g01460 Homeodomain 8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01460 K09338 - gmx:100797836 504.597