Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01459 ATGATCATGGAGCTACCCGATTCCACCGGCGGCGACCGCAACCTCAACGCGCCGCCGCCGCCCCAGCACAACCACCACCACCAGGACGCTCGCTCAGGCCTTGGAATCGACCTTAACGAGATCCCTTCGCCTTCCTCCTTGTTCGCCGAAACCCTACCGGACTCCGTCACCGTCGACGTCGTCCGTGCCTATCACGAGAACCCCGGCCCCCCGCCGGGAGCCCCCGCCGCTCTCCCCCGAGGCGGCCTCGCTCCCTGCGCTGCCTGCTCTAAGCCGTCCCCCGCCGCCGCCGGGAGCCACCACCACCTCGTCGTGTGCGACGGCTGCGAGCGCGGCTTCCATCTCGCCTGTGCCGGAATTCGCGGTGGAGGACGCCAGGCCGCGAGCCTCGAGGAGTGGGTCTGCGGCGAGTGCGTCGCTGCCGGAGTGAAGAGCAAGCGGTGGCCGTTGGGAGTGAAGCAGCTTCTCGATATCAACGCTCCGCCACCGAGCGAAGCCGAAGGCGACGGCGTCGGCGACGGAGACGCGCAGGATTTGAGAAAGCACACTCTGGGTGATAATTATTTTGTTGCCAATCCATTTGGTGCCCCTGTGACGTATTCAAACTTTTATAATGGAAATGCTACTGGGTTCCAAAAGGCTTCTGGAGGCTTGACACATGCTGATAGGGTGGGTTTTGAGGATATACTGAATCATACTCAATCAATTACTAGAAGATTTGAGGAGGCTCTTAAAGATTTTATTTCTGAACGACGTGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAATGAGCAGCTCTGAACTATATGCAGTTTACTGTGCACCCAATGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATTTGGGGCTAATGTCTGGCTACAACTCTGTTGAATCTGAACTAAGAAATGAGAGGTCTCTCGCACCTTTAAGTGGGTCTCTATCAAGAAAAAAAAAGTCTACAAGATCTCCAGTAGTCAACGGTATTACGGAAAAACGGGGAACCATGATTAGTAGTAATTGTAAGGATCCTTCTTCTGATGGGTTAAATGTGGAATGTGCTGGTATTAGGGGGAATATCTCAAAACCCTATGAAAGTGCAAGAAAAGAGGATGACCACTCCTGCCCTCAACAATCTGACGATGAACTTCCTTTGAAGTTCAGGGACTTCTTTGTTCTTTCATTGGGGAAAGTTGATGTGAGACCATCATATTATGATGTTAATCTTATCTGTCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATTACTGGTTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCGACGGTGTTCCTGTTCAGAATTTCCTGTTCCAGTTGGGTCAACCATCCTTTCAATGTCAAAATTTAGTCAACTTGTGAGTCAAGCCAATGAAGGTGAGAGAAAAACTAATGGTAGTATGGACTTAGATGATGGTGAAAGTATTCAGATGATGCTTCAAGACCCTTGTGTACCAACTGAAAATGATGTCCTAAGTTGCTTTGCAAACTTCTCAAATAAGGATACTCGTACATCAGATTTTTTACGCCCTGTGACTTTAGCTCAAGATAATACTATAAATTCAATAGCTGATAATGATGGAATTGGTGAAATTTTGGTGGAAGAGCGGTCATCATGCTCTGCATGGAGAGTTATTGCTCAGAAGTTAGTTAATGTTTGCAAGGATATCTGCAAACAGAAAGGAACTCTCAAGTTCTTTTGTAAACATGTTGAGAATGAAACATGCTTACATCAAGGGGATCTAGGGAACCAAAAAAGTGATACATACTTTACCTCATTGGATAAATTCTGTGGTTCCCTTAGTTCAGTTGGCATCCCAGATGTAATTTATGTAGACAGTGATCTGGAAGCTATCTCCGAGGCTTTGAGAAAATGGTTGGAGCAGGATAGGTTTGGACTAGATGTTGAATTTGTTCAAGAAGTATTGGAACAGCTTCCTGGTGTTGACTCTCTGCAGTATGAACTTTTAAATTGTAGAGATAACAGCTCATCATTGCCAACAGTAGGAAATGGTTTCTTAGAGGTTGAATGGAGAGATGGATCAAAATATCAGGAAGAAGCATTTCAAGGTTTATACAGGAGGTCGAAAAAGGCAAGTTTGACTGAAAAAAGCTTCAAGGAAGGTCGTCGTCCACCACTTGGGAAGCCATTATGCTCTAGGGCTCCGGGTGAGCTCATTGGTGACATTTTTCAGGCTTGGGAGCTTTTAGAGCGATTTAATGAAGTTCTGGACTTGAAAGAACCATTGTCATTAGATGAGCTTGAGAAGGAACTAATTAACCCTTGGTTTGATGGATTGGATTTTCTAGAGAAATCTGAGAGGGACATGGATGAAAGTCATGTTTTAATTTCCCAAGGAACTGATGGTAATTCTAGACCATTATTGTCCCCACAAGGTGAAACTGGTCCATCTGGTAGCATGGAAAGTTCTCATGCGTTTATTCAAGTGGAAACAGAAGCAATGAAAGAGGCTGCTCAAGTTAAGCTCGCATCTTTCACTTATGCCAGATGCTTTGGTGTAACTTTGACCAAGGCTCATAATTCATTGCTAAGAGTCCTAATAGGTGAATTGCTATCAAGGGTGGCTGTCCTGGTGGATCCAAATTCTGAACCTGGAGAAACACGAACAAGACGAGGAAGAAGGAAAGATACAGACAGTGGTCTTCCTGCTAAACGAACCAAGCTCAACATGCTTCCTATTAATGAATTAACCTGGCCAGAATTAGCTCGTAGATATATCTTGGCTTTTTTAACAATGGATGGCAACCTTGAGTCTGCAGAAATTACTGCCCGCGAAAGCGGTAAAGTATTTCGCTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGTTCTCTTACTGGTGTGGCTGGGATGGAAGCAGATGCACTGCTGCTTGCGGAGGCTACAAAGAAAGTTTTTGGTTCTTTGAGCAGAGAAAGTGATGTACTAACTATGGAAGAAGAAGAATCTGATGCAAAGGGTGCTTCTGAGAAAAATTTGGCAAATGATGGTAATGTTCCTGAATGGGCTCAAATGCTAGAACCTGTCAGAAAGCTACCAACTAATGTAGGCACTCGAATCAGAAAGTGTGTTTATGATGCTTTGGGTAAGGATCCACCAGAATGGGCGAGGAAAAAACTGGAACATTCAATCAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTCTTGGCTGAGGTTGCGGGTGAAGGACTGCAATCAAATCCCAGTAAAGGACAGAAAAAGAAGATTGTTATATCAATTTCTGACATTATCATGAAACGATGTCGCATTGTATTACGCCGTGCTGCTGCCGCAGATGATTCAAAGGTTTTCTGCAATTTGCTGGGAAGAAAATTGATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGATCTCCTGCCATGGTGGCTCGCCCACTTGATTTCCGCACTATTGACCTAAGATTAGCTGCTGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTTCGGGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTAGTCGAACTGGCTGAAAAGTTATCTGAAAACTTTGAATCATTATATAATGAGGAGGTTGTCACCAATGTTCAAAAATTTATGGAGTATGCTAAACTGGAATGCTTAACTACAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAACAAAAGAGACTCCAAAGGCCCCTTGGGATGAGGGCGTCTGTAAAGTATGTGGTATTGATAGGGATGATGATAGTGTTTTACTGTGTGATACTTGTGATGCTGAGTATCATACATATTGCTTGAACCCTCCACTTGCAAGGATCCCGGAGGGCAACTGGTACTGTCCTTCTTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAGTGTTCACAGGTTATTGGCAAACGCCGAAGTAAAAAATTCCAGGGTGAAGTTAATTCTCTTTACTTGGAATCCCTTACTCATTTATCTGCTGTAATTGAAGAAAAAGAATACTGGGAGCACAGCTTGGGCGAGAGAACTTTCCTTCTCAAATTTTTATGTGATGAGTTGCTGAACTCTTCCATGATACGCCAGCACCTTGAGCAATGTGCAGAGTTGTCAGCTGAGTTGCATCAGAAATTGCGAGCACACTCTGTAGAGTGGAAAAACCTGAAAACTAGAGAGGATATTCTATCCACAAAAGCAGCTAAAATTGATACTTTCTCATTAAATACTTCCGGAGATGTTGGTCCTAGGGAAGGGGTTACTACTTCATTATCAAATACTGGTAAATGTCTGGTCCAGCCACATACTGCAGTTGAAAATCCTAGTAATTTTGGGGTATTTGTTGATAGTCTGCCTTCAGAAGAGACCACCAAAGAGAAGTATAGGTTTGATAGTGTAGATAAAAGCATATCTGTGACAAACTCAGATTCTGATAGCCAAAATATGAATTCCTTAGATGTAGAGGGACAATTTAGAAATGTCTCTGGTGCAGTGGAGTCTCAATGTACTGATAAATCCCCCAAACCTTTTCCATCGCCAAATATGTCTCTAGAAATAAATGGTTCTAGTGGAGCAGCTCATGCCCAGTGTAACCACCAGAAATGTGAGGGAAGGGACATATCTACTCCTGTGACATGCCCGCAAGGTGGGGTGCCAGTTGATGTTTCACATATTGCTTTGAACGAGTCAGAACCCTATCACCTTGAGCTCAATGCCATCAAGCGTGATATTTCACTATTGCAGGACTCCATAACTAGTGTAGTATCACAGCTGCCGAGGCTCTCTGTTCGCCGGGAATTTTTGGGCATTGATTCCATTGGTAGATTGTATTGGGCTTCAACTTTGCCTGGAGGACGGTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTGCAGGAAAGAGGAATGTCGTTTAGCAGAGACTACGTGGAGAAGTTTTCTGTTCTGCAGCATTGTGCACTATCTGACAAAGATTCCTCTCCTTTCATGTCTCAGCTCAGAAATGCTTTGGCTAATAGTTCACCGTGGATTGCTTATGAAACTGATGCTGAAATTGAAGAACTCTTAGGTTGGCTGGATGATAGTGACCCTAAAGAAAAGGAACTGAAAGATTCCATTATGCAGGGACCAAGATCAAGATTCCAAGAGTTCATTAATGCACAGACAGAAGAGCAGGTTGAGGACCAAGGACCTATTTCTATGGCCAGAAATACAGAGAAAACAATATCTAATTCTCTTGTTACAAAGGCGACTTCCTTGCTGGAAAAGAAATATGGTCCTTTCTTTGAATGGGATATTGAGATGTTGAAGAAGCAAAATAAAAGGTCCAGAACAACTAATGATGAAAAGTTGTTTAGGTGTGAGTGCCTAGAACCCATATGGCCCTATAGAAGACACTGCACATATTGTCACAAAACTGTTTTGAGTGATGTTGAATTTGATGGACACGATGATGGCAAGTGTAATGCAGGTCTTCCGGTTGCCGAGAAGAATAGGAACAAAATTGGATCTTCTAAAGGAAAAGCAAACTTAAGATGTGATACCCCATGGGACAAATTCAGGGCTGATGCAGAGACAGCTGGAACCAATGTTGGTGGTTGTTCTAAGCTTAGCTCTAGATTGATTAAATTTTCAAATGAAGAATCCACTTGCCCATTTAATTTTGAAGATATATGTTCCAAGTTTGTGACAAATGATTCCAACAAGGAACTTGTCAAAGAAATAGGTCTTATTGGTTCGGATGGTATTCCATCCTTTGTTCCTTCTGTATCTCCTTTTGTTAGCGAGTGTATGCAATTCTCAACTCCAAAGGATGATAACATTATTGGTGTTTTGTCCAAACCAATGGAAAGCCGGGGTTTTCAGGGAAACACTGATGGAGCTGGTGCATGTCTTGACCATAATTCAGGCATTTCTACTGGTAGATCAGCTGCCAATGAAAGCAATAAATCCAATAAATCATCCTCGGGAGAGCAAAAAGATGGGAAGTTCTCTTTTTGTGGTCCCGCTTCAGATATGGGAGTTGATGGCTGCTGCGTGGTTCCTATGTCCTCGTTGAAACCATTAGTGGGAAAGGTTTCTCACATTTTGAGGCAACTTAAGATTAATCTGCTTGACATGGATGCTGCACTCCCAGCAGTTGCTGTGAGACCATCAAAGGCCGAGTCTGACAGAAGACAGGCTTGGCGTGCATTTGTTAAATCTGCAGAGACTATATATGAGATGATTCAGGCGACATTTACCCTGGAAGATATGATTAAGACGGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCGTTCTCAGCTGCTGCCAAATCTTCTACTTTGCCTTCCCTTGCACTTCGCATATACTCTCTTGATTTAGCCATTATATATGAGAAAACGCCCAGTTCAAGTTTTACTGAAAGCTCTGAACCTTCTGGCACAGCAGAAATGAGACCCCCGGTGAATGTGGATGCAGAGAAATCCAAAGGAAGCCGGAAGTCAAACAGGAAAAGGAAGGAATCTGATGGTTGA 6621 0.4353 MIMELPDSTGGDRNLNAPPPPQHNHHHQDARSGLGIDLNEIPSPSSLFAETLPDSVTVDVVRAYHENPGPPPGAPAALPRGGLAPCAACSKPSPAAAGSHHHLVVCDGCERGFHLACAGIRGGGRQAASLEEWVCGECVAAGVKSKRWPLGVKQLLDINAPPPSEAEGDGVGDGDAQDLRKHTLGDNYFVANPFGAPVTYSNFYNGNATGFQKASGGLTHADRVGFEDILNHTQSITRRFEEALKDFISERRGVLEEGWRVEFRQSMSSSELYAVYCAPNGKIFDSVYEVACYLGLMSGYNSVESELRNERSLAPLSGSLSRKKKSTRSPVVNGITEKRGTMISSNCKDPSSDGLNVECAGIRGNISKPYESARKEDDHSCPQQSDDELPLKFRDFFVLSLGKVDVRPSYYDVNLICPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIRRCSCSEFPVPVGSTILSMSKFSQLVSQANEGERKTNGSMDLDDGESIQMMLQDPCVPTENDVLSCFANFSNKDTRTSDFLRPVTLAQDNTINSIADNDGIGEILVEERSSCSAWRVIAQKLVNVCKDICKQKGTLKFFCKHVENETCLHQGDLGNQKSDTYFTSLDKFCGSLSSVGIPDVIYVDSDLEAISEALRKWLEQDRFGLDVEFVQEVLEQLPGVDSLQYELLNCRDNSSSLPTVGNGFLEVEWRDGSKYQEEAFQGLYRRSKKASLTEKSFKEGRRPPLGKPLCSRAPGELIGDIFQAWELLERFNEVLDLKEPLSLDELEKELINPWFDGLDFLEKSERDMDESHVLISQGTDGNSRPLLSPQGETGPSGSMESSHAFIQVETEAMKEAAQVKLASFTYARCFGVTLTKAHNSLLRVLIGELLSRVAVLVDPNSEPGETRTRRGRRKDTDSGLPAKRTKLNMLPINELTWPELARRYILAFLTMDGNLESAEITARESGKVFRCLRGDGGLLCGSLTGVAGMEADALLLAEATKKVFGSLSRESDVLTMEEEESDAKGASEKNLANDGNVPEWAQMLEPVRKLPTNVGTRIRKCVYDALGKDPPEWARKKLEHSISKEVYKGNASGPTKKAVLSVLAEVAGEGLQSNPSKGQKKKIVISISDIIMKRCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPLDFRTIDLRLAAGAYGGSHEAFLEDVRELWNNVRVAFGDQPDLVELAEKLSENFESLYNEEVVTNVQKFMEYAKLECLTTEMRKEVDDFIESTKETPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTECSQVIGKRRSKKFQGEVNSLYLESLTHLSAVIEEKEYWEHSLGERTFLLKFLCDELLNSSMIRQHLEQCAELSAELHQKLRAHSVEWKNLKTREDILSTKAAKIDTFSLNTSGDVGPREGVTTSLSNTGKCLVQPHTAVENPSNFGVFVDSLPSEETTKEKYRFDSVDKSISVTNSDSDSQNMNSLDVEGQFRNVSGAVESQCTDKSPKPFPSPNMSLEINGSSGAAHAQCNHQKCEGRDISTPVTCPQGGVPVDVSHIALNESEPYHLELNAIKRDISLLQDSITSVVSQLPRLSVRREFLGIDSIGRLYWASTLPGGRSRIVVDASAALLQERGMSFSRDYVEKFSVLQHCALSDKDSSPFMSQLRNALANSSPWIAYETDAEIEELLGWLDDSDPKEKELKDSIMQGPRSRFQEFINAQTEEQVEDQGPISMARNTEKTISNSLVTKATSLLEKKYGPFFEWDIEMLKKQNKRSRTTNDEKLFRCECLEPIWPYRRHCTYCHKTVLSDVEFDGHDDGKCNAGLPVAEKNRNKIGSSKGKANLRCDTPWDKFRADAETAGTNVGGCSKLSSRLIKFSNEESTCPFNFEDICSKFVTNDSNKELVKEIGLIGSDGIPSFVPSVSPFVSECMQFSTPKDDNIIGVLSKPMESRGFQGNTDGAGACLDHNSGISTGRSAANESNKSNKSSSGEQKDGKFSFCGPASDMGVDGCCVVPMSSLKPLVGKVSHILRQLKINLLDMDAALPAVAVRPSKAESDRRQAWRAFVKSAETIYEMIQATFTLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKTPSSSFTESSEPSGTAEMRPPVNVDAEKSKGSRKSNRKRKESDG* 2207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01459 2206 MobiDBLite consensus disorder prediction 2185 2206 - -
Lapu4g01459 2206 MobiDBLite consensus disorder prediction 806 833 - -
Lapu4g01459 2206 Gene3D - 1119 1241 IPR036427 GO:0005515
Lapu4g01459 2206 Pfam Bromodomain 1165 1220 IPR001487 GO:0005515
Lapu4g01459 2206 SUPERFAMILY DNA-binding domain 247 299 IPR016177 GO:0003677
Lapu4g01459 2206 ProSiteProfiles Bromodomain profile. 1167 1215 IPR001487 GO:0005515
Lapu4g01459 2206 Gene3D - 389 499 - -
Lapu4g01459 2206 MobiDBLite consensus disorder prediction 2008 2028 - -
Lapu4g01459 2206 ProSitePatterns Zinc finger PHD-type signature. 1277 1321 IPR019786 -
Lapu4g01459 2206 ProSitePatterns Zinc finger PHD-type signature. 86 138 IPR019786 -
Lapu4g01459 2206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 144 IPR013083 -
Lapu4g01459 2206 MobiDBLite consensus disorder prediction 1 37 - -
Lapu4g01459 2206 MobiDBLite consensus disorder prediction 2165 2206 - -
Lapu4g01459 2206 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1356 1400 IPR028942 -
Lapu4g01459 2206 ProSiteProfiles FYR domain FYRN motif profile. 388 441 IPR003888 GO:0005634
Lapu4g01459 2206 MobiDBLite consensus disorder prediction 890 912 - -
Lapu4g01459 2206 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1276 1323 IPR013083 -
Lapu4g01459 2206 ProSiteProfiles Zinc finger PHD-type profile. 1274 1324 IPR019787 -
Lapu4g01459 2206 SUPERFAMILY FYVE/PHD zinc finger 1265 1326 IPR011011 -
Lapu4g01459 2206 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 245 312 IPR001739 GO:0003677
Lapu4g01459 2206 Pfam PHD-finger 86 139 IPR019787 -
Lapu4g01459 2206 Pfam PHD-finger 1276 1322 IPR019787 -
Lapu4g01459 2206 SUPERFAMILY FYVE/PHD zinc finger 84 150 IPR011011 -
Lapu4g01459 2206 CDD Bromodomain 1122 1229 - -
Lapu4g01459 2206 MobiDBLite consensus disorder prediction 1009 1028 - -
Lapu4g01459 2206 ProSiteProfiles Zinc finger PHD-type profile. 83 141 IPR019787 -
Lapu4g01459 2206 PANTHER OS02G0192300 PROTEIN 21 2202 - -
Lapu4g01459 2206 Coils Coil 1395 1415 - -
Lapu4g01459 2206 SUPERFAMILY Bromodomain 1111 1231 IPR036427 GO:0005515
Lapu4g01459 2206 CDD PHD1_Lid2p_like 1276 1321 - -
Lapu4g01459 2206 CDD PHD_SF 86 138 - -
Lapu4g01459 2206 SMART PHD_3 1276 1322 IPR001965 -
Lapu4g01459 2206 SMART PHD_3 85 139 IPR001965 -
Lapu4g01459 2206 Pfam Methyl-CpG binding domain 246 298 IPR001739 GO:0003677
Lapu4g01459 2206 MobiDBLite consensus disorder prediction 894 912 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01459 28 2206 C2H2 Transcription Factor Family AT3G01460 44.707 0.0 1734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu4g01459 Bromodomain 8.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01459 K22768 - gmx:100820223 3515.7