Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01458 ATGACAGTTGCTTTAACAGTGGTGCTAATATTTGTGGGATTTGTGGTCCTGATCATACTTCATGTTTGTATTTCTGAGAGACTCTCTAGGAGAGGATCTATGGTTGAGAGGGGTGCAAATGGGGGCAGAAGCATGTCCATAGATGACTTGGAGAAGCTTCCATGTTATGATTATGTTGCCAAAGGCAACACAGGCAGCCCTGTGGATTGTGCGGTTTGCTTGGAGAGCCTCATCACTGGAGACAAGTGTAGGTTGTTACCTATGTGCAAGCACAGTTTTCATGCTCAATGTGTGGATACATGGCTTCTTAAGACACCCTTATGTCCAATTTGCAGGTCTAATGCTCATTCTCGCAGTGGAAACCAAGTTATAGGTAACAGTGACTACTTGGTTGCACCAGATAGTGTGTCTAGGGAGAGCCAAACTGCCACAAGAAGTCAGCAACATGACAGTATGGTGGTATTGGTTCAGTTCAGAGAAAGCCTAGAAAATGGTTCATCAACAAATGTTGTCAGTGAAAATCCAACATTAGGAAGTCGTAACTTGGTCAGAGAGGAGTAG 561 0.4403 MTVALTVVLIFVGFVVLIILHVCISERLSRRGSMVERGANGGRSMSIDDLEKLPCYDYVAKGNTGSPVDCAVCLESLITGDKCRLLPMCKHSFHAQCVDTWLLKTPLCPICRSNAHSRSGNQVIGNSDYLVAPDSVSRESQTATRSQQHDSMVVLVQFRESLENGSSTNVVSENPTLGSRNLVREE* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01458 186 ProSiteProfiles Zinc finger RING-type profile. 70 112 IPR001841 -
Lapu4g01458 186 MobiDBLite consensus disorder prediction 166 186 - -
Lapu4g01458 186 SMART ring_2 70 111 IPR001841 -
Lapu4g01458 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 121 IPR013083 -
Lapu4g01458 186 SUPERFAMILY RING/U-box 69 126 - -
Lapu4g01458 186 FunFam RING-H2 finger protein ATL2K 45 118 - -
Lapu4g01458 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 146 - -
Lapu4g01458 186 Pfam Ring finger domain 69 112 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01458 Lapu-Chr4 31741920 31742480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01458 50 135 C3H Transcription Factor Family AT2G18650 44.828 2.42e-17 77.0