Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01451 ATGTCAGAAAGCATGTATCCTAGGTTGTTGGTTTTTGACCATACCCATTTGAAGATGGCATGGGTTAAGCATCAAATCCAGCAGAAAGATGGTTACTTGAGCTACTCACCTCCCCTTTTGTCTTCTTCTTCTTCTTCACCTCCTTACCCTCCTGGTGCTGCTTTCCACAAAGAATCACCTTCAACAACAACAACAACATCGTCTGGCACTAGAATTAGTCCTGCTGTTCTCTTTATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGCCTTCTCCACTTGCTTGTTAGATTTCTCATAAAGCACCCATCTTCTTCTGCATCTGCTCAATCCAACAGACACCCAGAAATTTCCACATCTGATGCCCTCCAGAGGCAGCTGCAGCAGCTCTTCCATCTCCATGACTCTGGCTTGGATCAAGCTTTCATTGATGCTCTTCCTGTCTTTCAGTACAAGGAGATTGTTGGGTTGAAAGAGCCGTTTGACTGTGCTGTTTGTTTGTGTGAGTTTTCTGAGAAGGATAAGCTCAGGTTGTTGCCTATGTGCAGCCATGCTTTTCACATCAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACTTCTTACTCAGGGGTTTTCTATTGAGAACCCTATATTTGATTTTGATGATCTGAGGGAGGATGAAGGGTGTCCCTGTAATGGGGAGAGTGGATTCAGTACTAGACAGAAAACAGTAGTGGTTGAAGAAAGTGTGGAGAAAGGGGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGCTGAATGTGGAGGGTGGGGAGAGTGAAGTGGGAGAGACAAGTAGCAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGGTCTTACCAATATGTGGTTGGCAATTCAGACCTCAGGGTGGCCTTAAACCATGAAATTGATAAAGGTCAAGGCACAAGGCTCACCAAAGGAATGGAACATGATGATGGGAAGCTTTCAGTGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGTCAGTAAAGGTGACAGCTTTTCTGTGTCCAAAATCTGGTTGTGGCCAAAGAAGGGGAAATTACCTACTTCTTTGGATGCTCAAATGGGCATGCCAATGCCATCTTTTCTGAACACAGATTTTCAAAGGAGGAGGGAAACAGAAGGGGCATGA 1188 0.4444 MSESMYPRLLVFDHTHLKMAWVKHQIQQKDGYLSYSPPLLSSSSSSPPYPPGAAFHKESPSTTTTTSSGTRISPAVLFIIVVLAVLFFISGLLHLLVRFLIKHPSSSASAQSNRHPEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPIFDFDDLREDEGCPCNGESGFSTRQKTVVVEESVEKGVFPVRLGKFKKLNVEGGESEVGETSSSNLDARRCYSMGSYQYVVGNSDLRVALNHEIDKGQGTRLTKGMEHDDGKLSVEGDVEAKKISSVSKGDSFSVSKIWLWPKKGKLPTSLDAQMGMPMPSFLNTDFQRRRETEGA* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01451 395 MobiDBLite consensus disorder prediction 43 69 - -
Lapu4g01451 395 CDD RING-H2_EL5-like 163 206 - -
Lapu4g01451 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 212 IPR013083 -
Lapu4g01451 395 Pfam Ring finger domain 163 206 IPR001841 -
Lapu4g01451 395 SMART ring_2 164 205 IPR001841 -
Lapu4g01451 395 FunFam RING-H2 finger protein ATL46 126 211 - -
Lapu4g01451 395 SUPERFAMILY RING/U-box 143 212 - -
Lapu4g01451 395 ProSiteProfiles Zinc finger RING-type profile. 164 206 IPR001841 -
Lapu4g01451 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 68 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01451 Lapu-Chr4 31683775 31688177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01451 61 365 C3H Transcription Factor Family AT2G18650 40.896 3.44e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01451 - - gmx:100806337 644.81