Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01446 ATGTCGCAAGGGTTCGCAATCGAACTGTACTTGGATCCGGCGTTGGAGAATCAGGTGCTGAAGGCATGGAACGTTCTCGCGCGGCGGCAAATCACCACTCACCTCATCGAGATCGAGTCGCGCCCTCACATAACGCTCTTCTCCGCTCCCTTTCTAGAACCTTCCAAGCTCGAATCGCTTCTCAGAACCTTCGCATCCAAACATGATCCTCTTTCCCTCTCCTTCTCCTCCGTCGGCACCTTCCCCAACCACGCCGACAATCTCCTCTTCCTGGCCCCCACCCCTTCCCTCTCCCTCCTCCAATTCCAATCGCACCTCTGCGATGCTATCAGAAAAGAAGGCGTTGAGATCTCTGACGATTTCGCCTTCAATTCCTGGATACCGTACTGCTCGGTTGCACACCATGTCCCCAAAAATAGAATGCCGGAGGCTTTCTCCCTCTTGCGGGAACTCAAACTTCCGGTTTCTGGTTACGCTACGGACATCGCGCTTGTGCAGTTCTCTCCTGTTCGCGAACTCTTCTCCTTTGTGCTTGGTAACAATGTCGACTCCTGA 555 0.5387 MSQGFAIELYLDPALENQVLKAWNVLARRQITTHLIEIESRPHITLFSAPFLEPSKLESLLRTFASKHDPLSLSFSSVGTFPNHADNLLFLAPTPSLSLLQFQSHLCDAIRKEGVEISDDFAFNSWIPYCSVAHHVPKNRMPEAFSLLRELKLPVSGYATDIALVQFSPVRELFSFVLGNNVDS* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01446 184 Pfam 2'-5' RNA ligase superfamily 41 166 - -
Lapu4g01446 184 PANTHER - 1 182 - -
Lapu4g01446 184 Gene3D Cyclic phosphodiesterase 5 180 - -
Lapu4g01446 184 SUPERFAMILY LigT-like 5 165 IPR009097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01446 Lapu-Chr4 31628900 31629919 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01446 1 184 Calmodulin-binding Proteins AT5G40190 62.500 4.10e-80 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01446 - - pvu:PHAVU_004G019100g 358.607