Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01444 ATGCATGGGTGTGGTGGTGACCAGTGGAAACACAATCGGCACATGTGGCCTATACCTTCTAACGCGACCACTGTAGCCATCGATTCTTCACCGTCTCAATTTATATGCAAAGATGGACGCAAGATTCGCGCTGGTGATTGTGCACTTTTCAAGCCACCTAGGGACTCCCCTCCTTTTATTGGAATAATTCGCAAGCTAACGTATGATAAACAAGAAAGTCCAAGTTTAGAAGTGCATTGGCTTTACCGACCTGCTGATTTGAAACTTGCTAAAGGAATTGTGCTGGAAGCTGCACCGAACGAAGTTTTTTATTCCTTTCACAAGGATGAAACACCTGCTGCATCATTACTCCATCCGTGTAAAGTCGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTCGACGAGTTTATGACATTGAGAACAACTGTTTATGGTGGCTAACTGATAAGGACTACCTTAATGAACAACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCAAAACCCTTGAATGGTCCGACATCAACACAGTCATTGAAATCTGGTTCTGACAACATACAAAATAGTTCTTCATTTGGTGCACAGGGTAAGGGTAAAAAGAGAGAGCGGGGTGATCAGGGTTCTGATTCATCTAAAAAGGAGCGGTTATTTAAGATAGAAGATGGAGATTCTGGTCAGTTTAGACCGGAGAGCATGTTAAAGTCTGAGATTGCTAAAATAACTGATAAAGGTGGGCTTGTGGACTTTGAAGGAGTTGAAAAACTGGTACAGCTTATGCAACCTGATAGTGTTGATAAAAAAATAGATTTATCTGGGCGGATAATGCTTGTTGATGTAATTGCACTTACGGACCGGTATGACTGTCTGGGCTGGTTTGTACAGCTCAGAGGTTTGCCTGTGTTGGACGAATGGCTGCAGGAGGTCCATAAGGGCAAAATTGGTGATGGAAATATGCCCAAAGAAGGGGACAAGGCTGTTGATGATTTTTTGTTAGCTTTATTACGTGCATTGGATAAGCTTCCTGTGAACCTTCATGCACTGCAAACCTGTCATGTTGGAAAGTCTGTCAATCATTTACGCACCCACAAAAATGCTGAAATTCAGAAGAAAGCTAGGAGTTTAGTAGACACATGGAAGAGGCGTGTGGAAGCTGAAATGAACATGAATGATTCAAAGTCTGGTTCAAACCGTGCTGTTTCATGGCCTGCAAAGCCAGCAAACTCAGAGTCTCCTCATGTTGGAAATAGGAAAACAGGGGGATCCTCTGATAATGTTGTGAAGAGCTCTGCAATTCAACCCTCAATATCTAAAAGTTCCCAGTCTAAGTTAAGTTCTGGAGAAGCTTTGTCCAAGTCTTCATCTCCTGGCTCTACAAAATCGTTGACTACTTCAGCAGGCATTAACTCAAAAGATCAGAACAGTAAAGTTTTTGTTGGAGCTGCAACGGCAGATCTACCTCTGACGCCCATCAAAGAGGAGAGGAGCAGCAGTTCTAGTCAATCTCAAAATAACAGTATAACTTGTTCTAGTGAACATGCTAAAACTATTGGTTCTTGCAGGGAAGATGCAAAGAGCTCCACTGCAGTGTCAATGAGTGTGAGCAAAATTCATGGTTGTGCATCTCGAACTCGCAAGTCAAGCAATGGTGTTCATGGGGCTGGTGCTGTAGTAGGTCAGAAGGAGCACAGCTCTGCCAAAAATTCATCCAGAAATTCACCTTCTGAAAAAGTATCACCAACACGACCTTCCATTGAAAAAACAGCTGATCAGCCCCTTGCCGATCAAGGGAATAACCAGAGATTGATTCTTAGGTTGCCAAACACTGGTCGCAGTCCTTCAAGGGGAGCTAGCGGGGGCTCCTTTGAAGAACTAGCAACTACGAGCAGCAAAGCTTCGTCACCTGCTGACCGTAATGATAATCAGGATAGAAGAGTGAAAACTAAGACCGAGTGCTTGCTGACCCATGTGTCAAATATGATGAATGAAGCTTGTGATGCTAATGAAGCTTTGATTGGTGATGAAGGTAAGGGCACTCCAATAGTTGATGAGCGAAGCAGGTCAATTGAAGATGGTGGTGATAAGGTATTAGAAACATCAAAACCGACTACTTTGCCATCTGGGTTTGTTTCCAGATCAGGGCACACGTATGATGCTTCTTTAAGCCCGATGAATGCATTAGTTGAAAGCTGTGTAAAATTTTCTGAAGCAAGTGCATCCGTTTCCCATGGAGATGACGGGATGAACCTACTAGCTACTGTGGCTGCTGGGGAAATATCCAGATCGGAAAATGCATCACCTGTGGCGTCCCCTGAGAGAAAGTCTCCTGCAGCAGATGAACTGTGCTCAGGCAATGAATCGAAGTTGAAGCATTCTGGCGAAGCAGCAGTTCACACTCTTGCAGAGTTGAATGGTAGGGCTACAGGAGAGCATCCTTTGAGAACAGTTGATTCATTACAGATAAAAAGTGAATTGAGGCATCCTGCCATGACACAGTCACGTGATTTTCCAGGAGATGGTGAAATCATTTCATCTTCCCATGACACTCATTTAAATGTCTCCTCTACAGATTTGTTACAAAATGTTGAAGGTCCATGCTTACGACCTGAAACCAAAGAAGATGCCTCTGTCACTATGTTGGCAGCTAAAAAGGAGTGTAATGCAGACCCTGGAGTTTCAGACTCTAAATTAAAGCCAAGAGCATCCTCTTTTGATGATGATCAAAAGGTTGATCACAGGAATGAGGAGATCATTGAGGATGAGAAAATGGTGGTTTCGAAACCTGTTACAAATGTTAAGTCAGAAAACGAATCAGGTGAGAAACAGCATGAGTCAACTTCCAGTGTGGATAATGAGAACCAGACTAGTGTAGAGAAAGCAACAGGTACAGGAATGCAGGTGCCAAAGGCCTCCCCAATTTCTGAAAACTGCGAGTCAATATATTTAAAAAAGGAGTCACCTGCTTCTGGTAATGGTTTAATGGTACCCAGGGATGAAAAGACTGACGACATGAAGTCAGTTGTGATTGAGCCTGATTTAAGACGAATGGAGCGGGATTCTTCTGTTCCGGATGATTCTAATGAATGTGCTGAAGATAATATGGTCAGAAAAGAGGCCATTGATCAGTGCTCTGGTTCATCAGTGCAGCCAGATTTGCTAACTATGTCTAGGAAAGAGAATGAAGTGTCCAAATCATGTGAGCAAAAGCTAGATGCAAATCCATCTGAAGTTGCAGGAGAGAGGCATGCATGCTCTGTAGTTGGTGCTGATGCAGCTGTAAAACTTGACTTTGATTTAAATGAAGGCTTTCCGGTTGATGATGTGAGCCAAGGGGAGATTGCCAGACAGGAAGATCCTATCACATCATCTGCAGTTCATGTTCCTTGTCCGTTGCCTTTTCCTATTTCGTCCATGTCTGGTGGCTTCCATGCTTCAATTACAGTGGCATCCGCTGCTAAAGGGCCAGTTCTTCTTCCAGAGAACCCATTGAGGATCAAGGGGGAGCTTGGATGGAAAGGATCTGCTGCTACCAGTGCATTTCGACCAGCTGAACCTAGGAAAAATGCTGAGACGCAGTCCTCTACTAATGATATTACTTCTGTTGATGTCACTTCTATCAAACAAAGTCGCCCTCCCTTAGATTTTGACTTAAATGTGGCAGATGAACAATGTTTTGAGGATGTTGGTTCGCATGGTTCTTTAGAATCTGGACCACATGATCGTAGTGTGGGACTCGATCTTGATTTAAACAGAGTGGACGAGACTCCTGAAGTTGGTACTTTCTCTATAAGCAAACTGGATATTCCTTCTTTACCAAGGAAGCCTTCATTGTCCAGTGGGTTGTCTAATGGCGGAAGTGTCTCAAGAGACTTTGACTTAAATAATGGGCCTGGCCTTGAAGAAGTTGGCAGTGAACTCCCAGCACGTAGTCAGCAGATGAAAAATAGTATACCGTTTCCAACTTCTGTTCATAGCACGAGAACAAACAATGCTGAATATGGGAATTATTCTGCATGGTTTCCTCCAGCCAATTCCTATTCTGCAATTACTGTTCCTCCACTTCTGTCTGGTAGAGGAGAGCAGAGTTATGTTACTGGTGCCGGGGCACAACGTATAATGGGTCCTACAGGTAGCAGTCCTTTTGGTCCTGAAATCTACAGGGGATCAGTGCTTTCATCTTCTCCTGCTGTTGCTTATCCACCCACTACAGCTTTTCCTTATCCAGGATTTCCATTTGAAACCAACTTTCCATTATCCTCAAACTCCTTTTCTGGTTCAACTGCATTTATGGATTCGTCGAATGTGGGCGGGCTATGTTTTCCTACCATGCCTTCACAACCAGTTGGGCCTGGTGGTGTTGTTTCATCCACGTATCCTCGTCCGTATGTTATGAGTCTTCCAGGTGGTACAAGTAATGTGATACCTGACAGCAGAAAATGGGGAAGTCAAAGTCTGGATCTTAATTCAGGCCCTGGTGTGACAGATACAGAACGTAGAGAGGATAGATTGCCTTCAGGGTTGAGGCAAATGTCTGTCCCAAACTCACAAGCCTCGATGGAGGACCCCTTGAAGATGTTTCAGATGACAGGTGCTGCATTGAAAAGAAAAGAACCTGATGGTGGTTGGGATGGAGCTGAGAGATTAGGTTATAAGCAACATTCATGGCAATAG 4734 0.4387 MHGCGGDQWKHNRHMWPIPSNATTVAIDSSPSQFICKDGRKIRAGDCALFKPPRDSPPFIGIIRKLTYDKQESPSLEVHWLYRPADLKLAKGIVLEAAPNEVFYSFHKDETPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIENNCLWWLTDKDYLNEQQEEVNQLLDKTKLEMHGAVQSGGRSPKPLNGPTSTQSLKSGSDNIQNSSSFGAQGKGKKRERGDQGSDSSKKERLFKIEDGDSGQFRPESMLKSEIAKITDKGGLVDFEGVEKLVQLMQPDSVDKKIDLSGRIMLVDVIALTDRYDCLGWFVQLRGLPVLDEWLQEVHKGKIGDGNMPKEGDKAVDDFLLALLRALDKLPVNLHALQTCHVGKSVNHLRTHKNAEIQKKARSLVDTWKRRVEAEMNMNDSKSGSNRAVSWPAKPANSESPHVGNRKTGGSSDNVVKSSAIQPSISKSSQSKLSSGEALSKSSSPGSTKSLTTSAGINSKDQNSKVFVGAATADLPLTPIKEERSSSSSQSQNNSITCSSEHAKTIGSCREDAKSSTAVSMSVSKIHGCASRTRKSSNGVHGAGAVVGQKEHSSAKNSSRNSPSEKVSPTRPSIEKTADQPLADQGNNQRLILRLPNTGRSPSRGASGGSFEELATTSSKASSPADRNDNQDRRVKTKTECLLTHVSNMMNEACDANEALIGDEGKGTPIVDERSRSIEDGGDKVLETSKPTTLPSGFVSRSGHTYDASLSPMNALVESCVKFSEASASVSHGDDGMNLLATVAAGEISRSENASPVASPERKSPAADELCSGNESKLKHSGEAAVHTLAELNGRATGEHPLRTVDSLQIKSELRHPAMTQSRDFPGDGEIISSSHDTHLNVSSTDLLQNVEGPCLRPETKEDASVTMLAAKKECNADPGVSDSKLKPRASSFDDDQKVDHRNEEIIEDEKMVVSKPVTNVKSENESGEKQHESTSSVDNENQTSVEKATGTGMQVPKASPISENCESIYLKKESPASGNGLMVPRDEKTDDMKSVVIEPDLRRMERDSSVPDDSNECAEDNMVRKEAIDQCSGSSVQPDLLTMSRKENEVSKSCEQKLDANPSEVAGERHACSVVGADAAVKLDFDLNEGFPVDDVSQGEIARQEDPITSSAVHVPCPLPFPISSMSGGFHASITVASAAKGPVLLPENPLRIKGELGWKGSAATSAFRPAEPRKNAETQSSTNDITSVDVTSIKQSRPPLDFDLNVADEQCFEDVGSHGSLESGPHDRSVGLDLDLNRVDETPEVGTFSISKLDIPSLPRKPSLSSGLSNGGSVSRDFDLNNGPGLEEVGSELPARSQQMKNSIPFPTSVHSTRTNNAEYGNYSAWFPPANSYSAITVPPLLSGRGEQSYVTGAGAQRIMGPTGSSPFGPEIYRGSVLSSSPAVAYPPTTAFPYPGFPFETNFPLSSNSFSGSTAFMDSSNVGGLCFPTMPSQPVGPGGVVSSTYPRPYVMSLPGGTSNVIPDSRKWGSQSLDLNSGPGVTDTERREDRLPSGLRQMSVPNSQASMEDPLKMFQMTGAALKRKEPDGGWDGAERLGYKQHSWQ* 1578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01444 1577 ProSiteProfiles BAH domain profile. 40 155 IPR001025 GO:0003682
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 218 249 - -
Lapu4g01444 1577 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1577 - -
Lapu4g01444 1577 Pfam TFIIS helical bundle-like domain 355 404 IPR017923 -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 1529 1543 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 410 425 - -
Lapu4g01444 1577 Pfam BAH domain 42 147 IPR001025 GO:0003682
Lapu4g01444 1577 SMART BAH_4 40 155 IPR001025 GO:0003682
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 433 489 - -
Lapu4g01444 1577 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 309 418 IPR035441 -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 561 667 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 969 993 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 513 536 - -
Lapu4g01444 1577 Gene3D - 24 254 IPR043151 -
Lapu4g01444 1577 ProSiteProfiles TFIIS N-terminal domain profile. 321 407 IPR017923 -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 189 217 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 782 806 - -
Lapu4g01444 1577 SMART TFS2_5 327 406 IPR003617 GO:0005634
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 1497 1543 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 1197 1222 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 951 993 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 407 489 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 1208 1222 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 1555 1577 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 1497 1512 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 510 536 - -
Lapu4g01444 1577 CDD TFIIS_I 349 405 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 583 657 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 908 930 - -
Lapu4g01444 1577 MobiDBLite consensus disorder prediction 178 250 - -
Lapu4g01444 1577 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 272 408 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01444 Lapu-Chr4 31606871 31614991 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Lapu4g01444 BAH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01444 - - gmx:112998769 2563.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g01444 4 31606871 31614991 Lapu9g00752 9 10118057 10126686 ECH
Lapu4g01444 4 31606871 31614991 Lapu4g01444 4 31606871 31614991 ECH