Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01437 ATGGAGATTCAACAAACCCTCAAGCTCACTATTCACAAGAAATGGCCATCATCACCCAAGAAGACACCAAAAGATTCAGAACCAATAACCGCCACTACAACTCCAAAGCTGAAATGGAAGAAGATCTTCTTTCACACTAAAACCAAAATCCGAACCCCCCCAGAAGAGTTCCTGTGCCCCGTTTCTCATTCCCTCATGTTCGACCCCGTCATCGTCTCCTCTGGCCACTCCTTCGAACGCTCCTCCGTCGAAGCCTGTAAAAATCTCAACTTTACACCCCAACTCCCCGACGGCACCACCCCCGATTTCTCCACTCTCATCCCCAACCTCGCCCTTAAATCCGCCATCCTCAAATGGTGCCACACCACTCACACACCCCCTCCTCTCCCCCACAACAACCTCCTAAAACAAACCTCAATCTCCCCTAACACAAGCCTCGTTCAGCAAACCTCACACTCCCCAGGCACCCCCAACACAAACCTCGTACAAGGTTCGATCTCCCCGAACGTCGTTTCCACAGAAGAAAAATTCTCCGAAAGAGATCCGATCCTGGATTCCCTGGACGAAAACCCACCGTCGAGCAACCTCCGCCGCCATGCGGAAACCGAGGTTCCCATAAGACCGACACATCTGTACACGAGCTCCGAGGAATCCATAGCCACAACCTCAGCCTCAACGCCGCCGTTTCAGCTCGCCACGCGCCCCAGTTGCTGCTACTACTCTTCGCCTTCCTCGTCAGAAATCGAACCCGCTGCAACCCCAGAAGAAGAAGAAATCATGGGGAAGCTCAAAAGCCCACAGCAGAACATAATCGAGGAAGCGCTTCTCTCTCTTCGAAAACTCACCCGAGTGCAAGAAGAAATCCGGGTCCAACTCTGCACCCCGCGGTTACTCTCTGCGTTACGCTCCCTCGTTTTATCGAAACACGTGAACGTTCAGGTGAACGCTCTGGCTTCAGTGGTGAACCTTTCTCTGGATAAGAGTAACAAAGTGAAGATCGTGCGGTCGGGGATGGTGCCACCGTTGATCGAGGTTCTGAAATTTGGATCCCCTGAGGCGCAGGAACACTGCGCGGGCGCGTTGTTCAGTTTATCTCTCGAAGACGATAACAAAACCGCCATTGGGGTTTTGGGTGGTTTGGGTCCGTTGCTTCAGATGCTCCGAGTCGAGAGCGAGCGGACTCGGCATGACTCGGCCTTGGCGCTTTACCATTTGTCTTTGGTTCAGAGTAACCGGTCCAAGATGGTTAAACTCGGTTCGGTTCCGGTTCTTTTGAGTATGGTTAAGCTGGGTCACATGACGGGTCGGGTTTTATTGATTTTGGGGAACTTGGGTTCCGGATCGGACGGTCGGGCCACGATGTTGGATGCGGGTGTTGTGGAGTGTTTGGTTGGGTTGCTAAGTGGACCCGACTCGGCCACCGGGTCGACTCGGGAGAGTTGTGTTTCAGTGTTGTACGCGTTGAGTCACGGCGGCTTGAGGTTTAAGGCGGTGGCGAAGGCGGCGGGGGTGGTGGAGGTATTGCAAAAGGTGGAGAAAGTGGGGAGTGAGAGGGCTAGGCACAAGGTGAGGAAGATTTTGGAGATGATGAGGGCCAAGGAGGTGGAGGAGGAAGATGTGGATTGGGAGGAATTGCTTGACTCAGGGCTGGGTTGCCGGACTCGGAATCGACTCGGTGGCGGGTTGGACGAGTCGACTGCTAACTCGGCCGAGTTTTGA 1719 0.5387 MEIQQTLKLTIHKKWPSSPKKTPKDSEPITATTTPKLKWKKIFFHTKTKIRTPPEEFLCPVSHSLMFDPVIVSSGHSFERSSVEACKNLNFTPQLPDGTTPDFSTLIPNLALKSAILKWCHTTHTPPPLPHNNLLKQTSISPNTSLVQQTSHSPGTPNTNLVQGSISPNVVSTEEKFSERDPILDSLDENPPSSNLRRHAETEVPIRPTHLYTSSEESIATTSASTPPFQLATRPSCCYYSSPSSSEIEPAATPEEEEIMGKLKSPQQNIIEEALLSLRKLTRVQEEIRVQLCTPRLLSALRSLVLSKHVNVQVNALASVVNLSLDKSNKVKIVRSGMVPPLIEVLKFGSPEAQEHCAGALFSLSLEDDNKTAIGVLGGLGPLLQMLRVESERTRHDSALALYHLSLVQSNRSKMVKLGSVPVLLSMVKLGHMTGRVLLILGNLGSGSDGRATMLDAGVVECLVGLLSGPDSATGSTRESCVSVLYALSHGGLRFKAVAKAAGVVEVLQKVEKVGSERARHKVRKILEMMRAKEVEEEDVDWEELLDSGLGCRTRNRLGGGLDESTANSAEF* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01437 572 FunFam RING-type E3 ubiquitin transferase 254 530 - -
Lapu4g01437 572 PANTHER U BOX DOMAIN-CONTAINING 47 531 - -
Lapu4g01437 572 SMART Ubox_2 56 119 IPR003613 GO:0004842|GO:0016567
Lapu4g01437 572 MobiDBLite consensus disorder prediction 178 200 - -
Lapu4g01437 572 Pfam U-box domain 54 122 IPR003613 GO:0004842|GO:0016567
Lapu4g01437 572 Pfam Armadillo/beta-catenin-like repeat 328 365 IPR000225 GO:0005515
Lapu4g01437 572 Gene3D - 435 541 IPR011989 -
Lapu4g01437 572 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 337 379 IPR000225 GO:0005515
Lapu4g01437 572 Gene3D - 257 434 IPR011989 -
Lapu4g01437 572 FunFam RING-type E3 ubiquitin transferase 13 128 - -
Lapu4g01437 572 SMART arm_5 326 366 IPR000225 GO:0005515
Lapu4g01437 572 SMART arm_5 447 490 IPR000225 GO:0005515
Lapu4g01437 572 SMART arm_5 367 407 IPR000225 GO:0005515
Lapu4g01437 572 MobiDBLite consensus disorder prediction 12 31 - -
Lapu4g01437 572 ProSiteProfiles U-box domain profile. 52 126 IPR003613 GO:0004842|GO:0016567
Lapu4g01437 572 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 129 IPR013083 -
Lapu4g01437 572 SUPERFAMILY ARM repeat 260 528 IPR016024 -
Lapu4g01437 572 SUPERFAMILY RING/U-box 48 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01437 Lapu-Chr4 31511226 31513451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01437 46 572 U-box Gene Family AT5G40140 55.224 4.56e-174 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01437 - - gmx:100798675 840.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g01437 4 31511226 31513451 Lapu9g00760 9 10361384 10363677 ECH
Lapu4g01437 4 31511226 31513451 Lapu4g01437 4 31511226 31513451 ECH
Lapu4g01437 4 31511226 31513451 Lapu1g01382 1 26625682 26631930 PCT