Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01436 ATGGAATCAGGCGGAACCTTGGCCTTTCCAGATTTGGGTGAACACTGCCAGCAGCGCGATTGCCACCAGCTCGATTTTCTTCCTTTCACCTGCAACGGTTGCCGAATGGTGTTTTGTTTGGAGCACAGATCCTACAAATCCCACGCGTGCACGAAATCTGACCACAACAGCAGAAAAGTGATTGTCTGCAAAACGTGTTCCATGTCCATTGAGACCACCGGCTATGTGGGACAGGACCAGGAGGCAATCTTGGAGAAGCACCTCAAGTCTGGTAACTGTGATCCAGCCAAGAAGAAGAAACCCATTTGCCCTGTCAAGCGCTGCAAGGCAATTTTGACTTTCTCCAACAGCAACACCTGTAAAACTTGCCACATGAAGGTGTGCCTCAAGCACCGTTTTCCTGCTGATCATGCTTGTAGCAGAGGAGTTTCAGCTTCTTCCTCATCCTCTGTTGCTAATGATGGATGGAAGAATCGGTTTTTGGCTTCTTTACCTTCAAGGACCGGACAGGAATGCGCCAAAACTGGTGTAACTCGTTCTACGTCTCCTCCTACCACTCCTTCTGTCAAGGCCTATTGA 579 0.4922 MESGGTLAFPDLGEHCQQRDCHQLDFLPFTCNGCRMVFCLEHRSYKSHACTKSDHNSRKVIVCKTCSMSIETTGYVGQDQEAILEKHLKSGNCDPAKKKKPICPVKRCKAILTFSNSNTCKTCHMKVCLKHRFPADHACSRGVSASSSSSVANDGWKNRFLASLPSRTGQECAKTGVTRSTSPPTTPSVKAY* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01436 192 Gene3D - 3 69 IPR035896 -
Lapu4g01436 192 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Lapu4g01436 192 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Lapu4g01436 192 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Lapu4g01436 192 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 8 180 - -
Lapu4g01436 192 SUPERFAMILY AN1-like Zinc finger 10 61 IPR035896 -
Lapu4g01436 192 Gene3D - 78 158 IPR035896 -
Lapu4g01436 192 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Lapu4g01436 192 Pfam AN1-like Zinc finger 103 140 IPR000058 GO:0008270
Lapu4g01436 192 MobiDBLite consensus disorder prediction 171 192 - -
Lapu4g01436 192 SUPERFAMILY AN1-like Zinc finger 95 147 IPR035896 -
Lapu4g01436 192 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01436 Lapu-Chr4 31502902 31504420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01436 1 172 C2H2 Transcription Factor Family AT3G28210 59.884 5.24e-74 219