Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01421 ATGGAGAACTCGGAGAAGGTGGTGGCTGTGATCATGGTGGGTGGGCCCACCAAAGGGACCAGATTTCGGCCTCTTTCCTTCAATATTCCCAAACCCCTCTTCCCTTTGGCTGGTCAGCCAATGGTTCACCATCCTATTTTTGCATGCAAAAGGATACCCAATTTGGCTCAAATATATCTCATTGGATTCTACGAGGAGCGAGAATTCGCTCTATATGTCTCTTCAATCTCGAATGAGCTGAAATTACCAGTAAGATATTTGAAAGAGGATAAACCGCGTGGTTCAGCAGGTGGCCTTTACTACTTCAGAGATATTATCATGGAAGACAGCCCATCACATATATTTCTGTTAAACTGTGATGTTTGCTGCAATTTTCCTCTACCACCAATGCTTGATGCTCATAAAAGATACGGTGGGATGGGGACAATGTTGGTGATCAAGGTTTCAGCTGAATCTGCTAACCAATTCGGTGAGTTGGTTGCTGATCCAACCACTAACGAGTTGCTGCATTATACTGAGAAACCTGAGACATTTGTCAGCAATTTGATAAATTGTGGTGTATACGTTTTCAGCCCTGATATTTTTACGGCCATCGATAATGTATATATTAATCGAGAAGGCAGAGCTAATCTACGTCGTATCTCCAGCTTTGATACACTCCAATCTGCCACAAGGACTATTCCTGTAGATTTTGTGAGACTGGATCAAGATATATTATCACCTCTAGCTGGGAAGAAGCAATTATATACATACGAGACAATGGATTTCTGGGAGCAAATTAAAACTCCAGGAATGTCATTGAAATGCTCAGAATTGTATCTTGCCCAATTCCGGTATACTTCGCCTGATCTTTTGGCCAGTGGAGATGGTAATAGGAGTGCAACAGTTTCTGGTGATGTATATATTCATCCCTCTGCAAAAGTTCATCCATCCGCAAAGATTGGTCCCAATGTTTCTATCTCGGCAAACGTTCGTGTAGGTCCTGGAGTCAGGTTAAGCGGTTGTATCATCTTGGATGATGTTGAAATTAAGGAAAATGCTTTTGTCACAAACTCAATTGTTGGATGGAAGTCGTCACTTGGAAGATGGTCACATGTGCAGGCTGATGGTAACTACGATGCAAGACTTGGAACAACCATCCTAGGGGAAGCTGTAACGGTTGAAGATGAAGTGGTAGTGTTCAACTGCATTGTTCTTCCCAATAAGACTCTTAATGTCAGTGTGCAAGAAGAAATTATCTTGTAA 1245 0.4209 MENSEKVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPIFACKRIPNLAQIYLIGFYEEREFALYVSSISNELKLPVRYLKEDKPRGSAGGLYYFRDIIMEDSPSHIFLLNCDVCCNFPLPPMLDAHKRYGGMGTMLVIKVSAESANQFGELVADPTTNELLHYTEKPETFVSNLINCGVYVFSPDIFTAIDNVYINREGRANLRRISSFDTLQSATRTIPVDFVRLDQDILSPLAGKKQLYTYETMDFWEQIKTPGMSLKCSELYLAQFRYTSPDLLASGDGNRSATVSGDVYIHPSAKVHPSAKIGPNVSISANVRVGPGVRLSGCIILDDVEIKENAFVTNSIVGWKSSLGRWSHVQADGNYDARLGTTILGEAVTVEDEVVVFNCIVLPNKTLNVSVQEEIIL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01421 414 Gene3D Hexapeptide repeat proteins 286 411 - -
Lapu4g01421 414 FunFam Mannose-1-phosphate guanyltransferase alpha 6 277 - -
Lapu4g01421 414 FunFam Putative GDP-mannose pyrophosphorylase 284 411 - -
Lapu4g01421 414 Pfam Nucleotidyl transferase 9 210 IPR005835 GO:0009058
Lapu4g01421 414 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 8 414 - -
Lapu4g01421 414 CDD M1P_guanylylT_A_like_N 9 273 - -
Lapu4g01421 414 SUPERFAMILY Nucleotide-diphospho-sugar transferases 7 356 IPR029044 -
Lapu4g01421 414 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 276 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01421 Lapu-Chr4 31361601 31368601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01421 19 354 Eukaryotic Initiation Factors Gene Family AT2G34970 22.105 1.27e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01421 K00966 - gmx:100782402 780.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g01421 4 31361601 31368601 Lapu4g01421 4 31361601 31368601 ECH