Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01416 ATGAAGAGGGCAAGAGATGATATGTACTCTGCCTCTGCCTCTCAATTCAAACGCCCCTTTTCTTCGTCCCGTGCTGATTCCTATGGACAAAACCAAGTCCCAGGAAGTGGAGGGGGAGGAGGTGGGGGAGGTGGCAATGGAGGTGGCCTCGGTGGGGGGGCAACTACTTCCCAGAAACTGACAACCAATGATGCCTTATCCTATTTGAAGGAAGTCAAAGACATGTTTCAGGACCAAAGAGAGAAGTATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAGGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGTTGTTCAAAGGCCACAACAATTTGATTTTTGGATTTAACACATTCCTGCCAAAAGGTTATGAGATAACACTTGATGAGGACGAGGCTCCTCCAAAAAAAACAGTTGAATTTGAAGAAGCAATCAGTTTTGTGAACAAGATAAAGAAGCGGTTCCAAAGTGATGAGCATGTTTACAAATCATTCTTGGACATTTTAAACATGTATCGCAAAGAGCACAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTCTTCAAGGACCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATAGTCGTAATTCATTGCAGCGCTTCAATGAGCGGAGTTCTGCGGCGCCAATGATGCGCCAAATGCCACCAGACAAGGCGCAACGTTATCGAAGAGACAGGCTTCCTTCTCATGATCATGATATGAGTGCTGAACGCCCTGAGATGGACGATGACAAAACAATGTTGAACATACACAAGGAGAGGAAACGAGAAAGCAGGGATAGGAGAATGCGTGATCAGGATGAGAGAGAACAAGATCTTGATAACAGCAGGGATTTGAATTTGCAACGCTTTCCTGACAAAAAGAAAACTGTCAAGAAGGCTGAAGGTTTTGGAATGGCTTCTGACTTTCCTTCGTATGAAGACAAAGATACCTTAAAGAGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACATTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTTGGAAAGCATTCAGATCTTATGGACGAATTCAATGATTTCCTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCACTATCTACTGATGCTCATTTAGCTAGGCCATCAAAGTTGGAGGACAAAGACAGAGAGCACAAGCGTGATATGGATGGAGCTAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTGAGTGACTGCAAACGTTGTACTCCCAGCTACCGGCTTTTGCCTGCAGATTATCCAATTCCTACCGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGACCACTGGGTGTCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGAAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCAGCTGCTAAACGAGCAGAGGAATTGTATAATAACATCAACGAGAATAAAATCAGTGTGGAGACTTTGAACCGTATTGAAGAGCACTTTACTGTTCTAAATTTAAGGTGCATTGAACGTCTGTATGGTGATCATGGTCTTGATGTTATAGACATATTGCGTAAAAACCCAACCCATGCCCTGCCAGTAATATTGACTCGACTGAAACAGAAGCAAGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTGGATCATCGTAGCTTCTATTTCAAACAACAAGATTCAAAGAATTTGAGCACAAAATCTTTGGTTGCCGAGATTAAAGAAATTAAAGAAAAACAGCAGAAAGAAGACGATATTATTCAGTCTATCGCAGCTGGAAATAAACAGCCTCTAATTCCTCATCTGGAATTTGAATATTCTGATGCTGCTGGGATTCATGAAGATCTGTATAAACTTGTTCGTTATTCATGTGAGGAGTTATTCTCAAGTAAAGAGTTGTTAAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCAATACTTGGTGTTCCTTCCCAGTCTCATGCTATAGAAAGGGCGGAGGATAGGAAAAGTGGGCATAATGTTCGCAATTTTGGTGTACCAAATATAGGGGGTGACAGAAGCCCTCATGGAGACTCTCTTTCAATGAATTCAAGGTTACCAAAATCTGATAAGAATGAAGCTGATGGTAGACTAACTGAAGCTAAGAATGTTCACCGGACTAGTATAGCAACCAATGATAAAGAAAATGGATCTGTTGGTGGTGAACTTGGTTGTAGAGATGATCCATTAATGGATAAAGGACTGAAAAATGTAGAATGCAATGATAAAGCCTCCGGATTTAGCAAACAATTTACCTCTGATGATCAAGGAGCTAAAACCAGTGTATCAATTGCAATAAGAGGAGAAAACAGCCTGAACAGAACCAACATAGATGTATCACCAGCCCGAGCCCTTACTCCATCACAACCTACTGATATTGATGATTCTCTAGCCAAGTCTCAGGGTGCTAATGTACCATTGGTGGAGGGATGCGACATGCCAACTCCAGTACCTGTTGCCAATGGTGTTTTAAGTGAGAGCAGCAAAGTAAAAACTCATGATGAATCTGCTGGGCCTTGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCAAATGGTGACTCGGAGGAGGATAACTTTGTTGCCTATGGAGATTCAAATGTGCAGTCAATGGCTAAATCAAAGCACAACGCTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATGTTGTCCTGAGGCTGGGGGTGACAATGATGCAGATGCTGACGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTTCGGGAAGATCATGAAGAGGAGGAAGATATAGAACAAGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATCTGCGATGCACAAGCTGGGGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTGTCATCCGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTTGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGCTTTTTAGACTTCATCAAACTCTTTATGAGAGGATCTTATCAGCAAAAACAAATTCATTGAGTGCAGAAATAAAATGGAAAGCAAAAGATGCTAGCTTACCAGATCCTTATTCAAGATTTATGAATGCACTGTACAACTTGCTTGATGGATCTGCTGAAAATGCAAAGTTTGAAGATGAATGCCGAGCAATTATAGGGAACCAATCATACGTGTTATTCACCTTGGACAAGTTAATATACAAATTGGTCAGACAGCTTCAAACTGTCGCAACTGACGAGGTAGACAGTAAGCTTCTCCAATTATATGAATATGAAAAGTCTCGGAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCATGAGGATAATATATATAGGTTACAATGTTCCTCTAACCCATCACGACTATCCATCCAGTTTATGGACAATATGAATGAAAAGCCTGAGTTGTTTGCCGTTTCTATTGATCCCAATTTCTCCTTTTATCTGCACAATGATTTTCTGTCTGTCTTTCCCGGCAAAAAGGAACCCCATGGCATCATACTGCATAGAAACAAACGCAAATATGGAAACTTAGATGAGCTTTCTGCTATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGTAAGATAGCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACTCAAGACTTCTTCTTCCGCCCGAGAAAGAAGCGACGAACGTCGGCGGGGACCACAACCTCCCAGTTTCGTAGGGATAGAGAGGAAAGATTCCGCAAATTATTGGCATGCTCATAA 4179 0.4125 MKRARDDMYSASASQFKRPFSSSRADSYGQNQVPGSGGGGGGGGGNGGGLGGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQSDEHVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYSRNSLQRFNERSSAAPMMRQMPPDKAQRYRRDRLPSHDHDMSAERPEMDDDKTMLNIHKERKRESRDRRMRDQDEREQDLDNSRDLNLQRFPDKKKTVKKAEGFGMASDFPSYEDKDTLKSMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLARPSKLEDKDREHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKRAEELYNNINENKISVETLNRIEEHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSRCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDAAGIHEDLYKLVRYSCEELFSSKELLNKIMRLWSTFLEPILGVPSQSHAIERAEDRKSGHNVRNFGVPNIGGDRSPHGDSLSMNSRLPKSDKNEADGRLTEAKNVHRTSIATNDKENGSVGGELGCRDDPLMDKGLKNVECNDKASGFSKQFTSDDQGAKTSVSIAIRGENSLNRTNIDVSPARALTPSQPTDIDDSLAKSQGANVPLVEGCDMPTPVPVANGVLSESSKVKTHDESAGPCKIEKEEGELSPNGDSEEDNFVAYGDSNVQSMAKSKHNAERRKYQSRNGEDECCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEQDDVDGKAESEGEAEGICDAQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVLFRLHQTLYERILSAKTNSLSAEIKWKAKDASLPDPYSRFMNALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDSKLLQLYEYEKSRKPGKLNDSVYHANAHVILHEDNIYRLQCSSNPSRLSIQFMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPGKKEPHGIILHRNKRKYGNLDELSAICSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPRKKRRTSAGTTTSQFRRDREERFRKLLACS* 1393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01416 1392 Gene3D Paired amphipathic helix 141 213 IPR036600 GO:0006355
Lapu4g01416 1392 Coils Coil 548 568 - -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 1004 1024 - -
Lapu4g01416 1392 Gene3D Paired amphipathic helix 64 126 IPR036600 GO:0006355
Lapu4g01416 1392 SUPERFAMILY PAH2 domain 345 411 IPR036600 GO:0006355
Lapu4g01416 1392 ProSiteProfiles PAH domain profile. 142 212 IPR003822 GO:0006355
Lapu4g01416 1392 Pfam Paired amphipathic helix repeat 165 209 IPR003822 GO:0006355
Lapu4g01416 1392 Pfam Paired amphipathic helix repeat 81 125 IPR003822 GO:0006355
Lapu4g01416 1392 Pfam Paired amphipathic helix repeat 364 408 IPR003822 GO:0006355
Lapu4g01416 1392 Gene3D Paired amphipathic helix 340 413 IPR036600 GO:0006355
Lapu4g01416 1392 SUPERFAMILY PAH2 domain 139 211 IPR036600 GO:0006355
Lapu4g01416 1392 PANTHER SIN3B-RELATED 58 1253 IPR039774 GO:0003714
Lapu4g01416 1392 SUPERFAMILY PAH2 domain 56 127 IPR036600 GO:0006355
Lapu4g01416 1392 FunFam Paired amphipathic helix SIN3-like protein 141 212 - -
Lapu4g01416 1392 FunFam Paired amphipathic helix protein SIN3 339 413 - -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 434 455 - -
Lapu4g01416 1392 FunFam Paired amphipathic helix protein Sin3 64 126 - -
Lapu4g01416 1392 Pfam Sin3 family co-repressor 477 569 IPR013194 -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 761 805 - -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 928 1076 - -
Lapu4g01416 1392 SMART hdac_interact2seq4b 475 575 IPR013194 -
Lapu4g01416 1392 Pfam C-terminal domain of Sin3a protein 1112 1359 IPR031693 -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 938 959 - -
Lapu4g01416 1392 ProSiteProfiles PAH domain profile. 342 411 IPR003822 GO:0006355
Lapu4g01416 1392 ProSiteProfiles PAH domain profile. 58 128 IPR003822 GO:0006355
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 247 311 - -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 1 56 - -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 432 455 - -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 984 1003 - -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 14 34 - -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 1040 1060 - -
Lapu4g01416 1392 MobiDBLite consensus disorder prediction 234 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01416 Lapu-Chr4 31319171 31329881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01416 43 161 WRKY Transcription Factor Family AT4G12020 50.000 2.19e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu4g01416 Sin3a_C 3.8e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01416 K11644 - gmx:100807181 2461.8