Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01414 ATGGGTGGTGGTGGTGGTGATCATAATAGTTCTACTTCCATGGTTATTAAGAACAAGAAGAGTGGCTCTATTCGGTCCATTTTTATGCATGCTGATGGCCTAGATATGTTTCTCATGATCTTGGGGATGATTGGGGCCATTGGTGATGGGATAGGCACCCCTTTGGTGTTGTTTATCACAAGCAAAATTATGAACAATATTGGTAATTTTTCTGGGGGCATAGACAGCACTTTCCTCCATGGCATCAATCAGAATGCTGTGGTTTTGTTATATCTAGCTGGTGGGTCTTTTGTTGCTTGTTTTCTAGAGGGTTATTGTTGGACAAGAACTGGTGAAAGACAAGCTGCAAGAATGAGAGTGAGGTACCTAAAGGCAGTGTTGAGGCAAGAAGTTGCATACTTTGATCTGCATGTCAGTAGCACATCTGAGGTCATCACCAGTGTCTCTAATGACAGCCTCGTAATTCAAGATGTTCTTAGTGAAAAGGTTCCAAATTTTTTGATGAATGCCTCTATGTTTGTTGGAAGCTACATAGTGGGTTTTGCATTATTATGGAGATTGACCCTTGTGGGGTTCCCTTTTGTGGCTCTACTTGTGATCCCTGGTTTTATGTATGGGAGAACACTGATGGGGTTGGCTAGGAAGATAAGAGAAGAGTACAACGAGGCTGGTACCATAGCAGAACGGGCAATATCTTCTATCAGAACCGTTTACTCCTTTGTGGGGGAAAGCAAGACCATAGATGCTTTCTCTGATGCTCTACAGGGATCAGTTGAGTTAGGACTCAGACAAGGCTTAGCAAAAGGTTTAGCCATTGGAAGCAATGGTGTTGTGTTTGCTATATGGGCTTTCATATCCTATTATGGTAGCAGATTGGTCATGTATCATGGTGCTAAAGGTGGGACTGTGTTTGCAGTTGGAGCAGCCATAGCACTTGGAGGATTAGCTTTAGGTGCTGGTTTGTCCAACGTGAAGTACTTCTCAGAGGCAAGCACTGCAGGAGAACGCATAATGGAAGTGATAAAAAGGGTTCCAAAGATTGATTCTGACAACATGGCTGGGGAGATTCTGGAGGAGGTTTCTGGGGAAGTAGAGTTTGAGCATGTGAACTTTGTGTACCCTTCAAGGCCTGACAGTGTGATTCTGAACGATTTTTGCCTGAGGGTTCCTGCAGGGAAAACAGTGGCACTAGTTGGAGGGAGTGGCTCAGGAAAATCCACTGTGATATCACTTCTGCAGAGGTTCTATGACCCAGTTGAGGGAGAGATACGTGTTGATGGTGTGGCCATTCACAAGTTGCAACTTAAGTGGTTGAGATCTCAAATGGGGTTGGTGAGTCAAGAGCCTGCACTGTTTGCAACCAGCATTAAGGAGAATATACTGTTTGGAAGAGAAGATGCCACAGAAGAAGAGGTTGTGGAGGCTGCAAAAGCCTCCAATGCTCATGCTTTCATCTTACAGTTGCCACAAGGATATCATACTCAGGTTGGAGAGAGAGGAATTCAAATGTCCGGGGGACAAAAGCAAAGAATTGCAATAGCACGAGCAATAATAAAGAAGCCACGAATTCTGTTGTTAGATGAAGCAACAAGTGCCCTAGATTCTGAATCCGAACGAGTTGTGCAAGAAGCATTGGACAAAGCAGCAGTGGGGCGCACCACCATCATCATTGCCCATCGATTATCCACCATAAGAAACGCAGATGTGATTGCTGTGGTGCAAAGTGGGAAGATCATGGAAATGGGGTCACACCATGAACTCATCCAAAACGACAATGGCCTTTACACATCTCTAGTTCGTCTCCAACAATCAAAAAATGAGAGAGAAGACACCCCTTTTCACACTCATCCTGCTTCATCAGCAGCAGCAGCATCCATATCAAACAAGGATAATCACAACACAAGCAGTCGTAGGCTTTCTCTTGTGAGTCAATCTAGCTCTGCTAACTCAATCCCTCGTGTTGTTGGTGCTGGTGATGATGTTGTTGAAGAGGTTGTGGAAGATAAGAAGCTGCCACTTCCCTCCTTTAGAAGATTGCTAGCACTGAATATTCCTGAGTGGAAGCAAGCATGTTTGGGGTGTTTGAATGCAGTGTTGTTTGGTGCAATTCAGCCTGTGTATGCATTTTCAATGGGGTCGGTGATATCTGTTTACTTTCTCCCAGACCATGATGAGATAAAAGAGAAAACCAGGATCTACTCGCTTTGTTTTGTAGGGTTGGCAGTGTTCTCCTTGGTGGTTAATATCCTCCAACACTATAGTTTTGCTTACATGGGAGAGTACTTAACCAAAAGGATCAGAGAAAGAATGCTTTCCAAGATACTCACTTTTGAAGTTGGATGGTTCGATCAAGATGAAAATTCCACTGGTGCTGTTTGTTCTAGACTGGCCAAAGAAGCCAATGTGGTAAGGTCTTTGGTGGGAGATAGAATGGCTCTAGTGGTGCAAACCATTTCTGCAGTGGTAATAGCTTTCACTATGGGCCTAATCATTGCATGGAGGTTGGCCATTGTTATGATAGCAGTTCAACCCATTATCATAGCCTGCTTCTACACAAGACGTGTCCTTCTCAAGAGCATGTCTAGCAAGGCCATCAAGGCCCAAGATGAAAGTAGCAAGATAGCTGCAGAAGCTGTTTCCAACCTTAGAACCATCACAGCATTTTCTTCCCAAGAGAGAATCCTAAAGATGCTTGAAAAGGCCCAAGAGGGACCAAGTCATGAAAGCATTCGGCAGTCATGGTTTGCTGGTGTTGGTCTTGCCTGTTCCCAAAGCCTTACATTTTGCACTTGGGCCTTGGACTTTTGGTATGGTGGCAAGCTTGTGTTTCAAGGGTTCATCAATGCCAAAGCACTGTTTGAGACCTTCATGATCCTAGTGAGCACAGGTAGGGTCATTGCAGATGCTGGCAGCATGACCAATGACCTTGCCAAGGGGTCTGATGCTGTGGCCTCAGTTTTTGCAATCCTAGATAGGTACACAAAAATTGAGCCTGATGACATAGATGGGTACAAGCCTGAAAAATTAACAGGGAAAATAGAGCTTCATGATGTCCATTTTGCATACCCAGCTAGGTCCAATGTGATGATCTTTGAAGGCTTTTCAATCAAAATAGATGCAGGCAAGTCAACAGCATTGGTAGGGCAAAGTGGGTCCGGTAAATCAACAATAATAGGCCTAATAGAGAGATTCTATGACCCACTAAAAGGGACAGTGACCATAGATGGTAGAGACATAAAATCGTATCATCTTAGGTCACTAAGGAAGCACATTGGTCTGGTAAGCCAAGAGCCAACTTTGTTTGGTGGGACCATAAGGGAAAATATTGCATATGGAGCATCTAACAAGGTTGATGAAACTGAGATCATAGAAGCAGCAAGAGCAGCTAATGCTCATGATTTCATAGCAAGCCTGAAGGATGGATATGAAACATGGTGTGGCGATAGAGGTGTGCAACTCTCAGGGGGTCAAAAGCAAAGAATTGCAATAGCAAGAGCCATATTGAAGAACCCAGAAGTGCTGTTGCTGGATGAAGCCACCAGTGCTCTTGATAGCCAATCAGAGAAATTGGTGCAAGATGCTCTAGAGAGAGTGATGGTTGGGAGAACTAGTGTGGTGGTGGCTCACAGGTTAAGCACAATACAAAACTGTGATCTAATTGCTGTGTTAGACAAGGGAAAAGTGGTGGAGAAAGGGACTCACTCATCTTTGTTGGCTGAGGGACCAAGTGGAGCTTATTACTCTTTGGTGAGTTTACAAAGAAGACCATCAAAACTTGAATGTTAA 3786 0.4411 MGGGGGDHNSSTSMVIKNKKSGSIRSIFMHADGLDMFLMILGMIGAIGDGIGTPLVLFITSKIMNNIGNFSGGIDSTFLHGINQNAVVLLYLAGGSFVACFLEGYCWTRTGERQAARMRVRYLKAVLRQEVAYFDLHVSSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFVGSYIVGFALLWRLTLVGFPFVALLVIPGFMYGRTLMGLARKIREEYNEAGTIAERAISSIRTVYSFVGESKTIDAFSDALQGSVELGLRQGLAKGLAIGSNGVVFAIWAFISYYGSRLVMYHGAKGGTVFAVGAAIALGGLALGAGLSNVKYFSEASTAGERIMEVIKRVPKIDSDNMAGEILEEVSGEVEFEHVNFVYPSRPDSVILNDFCLRVPAGKTVALVGGSGSGKSTVISLLQRFYDPVEGEIRVDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATEEEVVEAAKASNAHAFILQLPQGYHTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIRNADVIAVVQSGKIMEMGSHHELIQNDNGLYTSLVRLQQSKNEREDTPFHTHPASSAAAASISNKDNHNTSSRRLSLVSQSSSANSIPRVVGAGDDVVEEVVEDKKLPLPSFRRLLALNIPEWKQACLGCLNAVLFGAIQPVYAFSMGSVISVYFLPDHDEIKEKTRIYSLCFVGLAVFSLVVNILQHYSFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTISAVVIAFTMGLIIAWRLAIVMIAVQPIIIACFYTRRVLLKSMSSKAIKAQDESSKIAAEAVSNLRTITAFSSQERILKMLEKAQEGPSHESIRQSWFAGVGLACSQSLTFCTWALDFWYGGKLVFQGFINAKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVASVFAILDRYTKIEPDDIDGYKPEKLTGKIELHDVHFAYPARSNVMIFEGFSIKIDAGKSTALVGQSGSGKSTIIGLIERFYDPLKGTVTIDGRDIKSYHLRSLRKHIGLVSQEPTLFGGTIRENIAYGASNKVDETEIIEAARAANAHDFIASLKDGYETWCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGKVVEKGTHSSLLAEGPSGAYYSLVSLQRRPSKLEC* 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01414 1261 ProSitePatterns ABC transporters family signature. 1153 1167 IPR017871 GO:0005524|GO:0016887
Lapu4g01414 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1005 1253 IPR027417 -
Lapu4g01414 1261 CDD ABC_6TM_Pgp_ABCB1_D2_like 680 996 - -
Lapu4g01414 1261 FunFam ABC transporter B family member 1 26 363 - -
Lapu4g01414 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 364 600 IPR003439 GO:0005524
Lapu4g01414 1261 MobiDBLite consensus disorder prediction 606 644 - -
Lapu4g01414 1261 Gene3D - 1003 1259 IPR027417 -
Lapu4g01414 1261 FunFam ABC transporter B family member 4 1003 1258 - -
Lapu4g01414 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 602 IPR027417 -
Lapu4g01414 1261 MobiDBLite consensus disorder prediction 618 644 - -
Lapu4g01414 1261 Gene3D - 354 603 IPR027417 -
Lapu4g01414 1261 CDD ABC_MTABC3_MDL1_MDL2 364 602 - -
Lapu4g01414 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 697 978 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g01414 1261 FunFam Putative ABC transporter B family member 8 654 1001 - -
Lapu4g01414 1261 PANTHER ABC TRANSPORTER B FAMILY 16 737 IPR039421 -
Lapu4g01414 1261 ProSitePatterns ABC transporters family signature. 503 517 IPR017871 GO:0005524|GO:0016887
Lapu4g01414 1261 FunFam ABC transporter B family member 4 354 609 - -
Lapu4g01414 1261 CDD ABC_MTABC3_MDL1_MDL2 1013 1253 - -
Lapu4g01414 1261 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1013 1250 IPR003439 GO:0005524
Lapu4g01414 1261 Pfam ABC transporter 1033 1181 IPR003439 GO:0005524
Lapu4g01414 1261 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g01414 1261 Pfam ABC transporter 382 531 IPR003439 GO:0005524
Lapu4g01414 1261 SUPERFAMILY ABC transporter transmembrane region 35 348 IPR036640 GO:0005524|GO:0016020
Lapu4g01414 1261 SMART AAA_5 391 686 IPR003593 GO:0016887
Lapu4g01414 1261 SMART AAA_5 1040 1233 IPR003593 GO:0016887
Lapu4g01414 1261 Gene3D ABC transporter type 1, transmembrane domain 27 982 IPR036640 GO:0005524|GO:0016020
Lapu4g01414 1261 SUPERFAMILY ABC transporter transmembrane region 670 997 IPR036640 GO:0005524|GO:0016020
Lapu4g01414 1261 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 337 - -
Lapu4g01414 1261 Pfam ABC transporter transmembrane region 39 306 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lapu4g01414 1261 Pfam ABC transporter transmembrane region 692 960 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01414 Lapu-Chr4 31300251 31308653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01414 1 1254 Calmodulin-binding Proteins AT2G36910 44.505 0.0 1080
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01414 K05658 - gmx:100807709 2161.73