Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01409 ATGGATCGCAGCAACAAGTTTTCCACTTCGTTCCTTCTGTTAACCCTGCTGGGATTTCATGTGTTCCTCGCTTCGTCGCAGGCCGAGGACGACGTTAGATGTCTCCGCGGCATCAAAGAAGCTCTTTCGGACCCAGAGGGCCGCCTGGTCCCGTGGCGGTTCGAGAACACTACCGTGGGTTTCATCTGCGACTTCGTGGGTGTGACTTGCTGGAACCAAAGGGAGAACCGCGTCTTAAGTTTGGACTTCCGAGATTACAAACTTTCGGGTCGGATCCCCGAGGCTTTGAAGTACTGTGGGAAGAGCCTTCAAAGGTTGGATCTTGGTTCAAATTCTTTCTCCTCAGAGATCCCACACGAGATCTGTAGTTGGATGCCGTTTTTGGTTTCTCTAGATTTGTCTGGTAATCAACTCTCTGGGCCTATTCCTCCCACACTTGTGAATTGTTCATATTTGAATGAGTTGATGTTGTCAGATAACCAGCTTTCTGGGTCAATTCCCTTTGAGTTGGGAAGTTTGAGTAGGCTCAAGAAGTTTTCCGTGGCCAATAATAGGCTTAGTGGTACAATTCCTGAGTTTTTCCACGGGTTTGATAGGGAGGGTTTTGAGGGGAATAGTGGGTTATGTGGGGGTCCTCTTGGATCCAAGTGTGGTGGGATGAGTAAGAAGAATCTTGCTATTATTATTGCTGCCGGGGTGTTTGGTGCTGCTGCTTCATTGTTGCTGGCTTTTGGCCTGTGGTGGTGGTACCATTTGAGTGGGAAGAGGAAGAAGAAGGGGTATGGGGTTGGTTCTAGTGTAGGTGCTGGCGGTGGTGCTGGTGATTGGGCTTTGAGGTTAAGAGGGTATAAGCTTGTGCAAGTTAGTCTCTTTCAGAAACCTATTGTGAAGGTGAAGTTGGGGGATTTGATGGCTGCTACTAACAATTTCAGTGGGGAGAATGTTCTTTTTGCGACAAGAACCGGGACAACGTACAAGGCTGATCTCCCGGATGGTTCCACACTTGCAGTGAAACGGTTGAGTGCTTGTAGGATTGGGGAGAAACAGTTTGGGATGGAGATGAACAGGTTGGGGCAGGTTAGGCACCCGAATTTGGCTCCCCTGTTGGGGTACTGTGTGGTGGAGGAGGAGAAGTTGTTGGTTTACAAGCACATGTCCAATGGGACGTTGTATTCCTTGTTGCACAAGAATGGTGGAGTGTTGGATTGGTTGATGAGGTTTAGGATTGGGTTGGGCGCGGCGAGGGGGCTTGCATGGCTGCACCATGGCTGCCACCCTCCCATTATACAGCAGAACATTTGCTCCAATGTGATTCTTGTTGATGAGGAGTTTGATGCTCGGTTGATGGACTTTGGGCTAGCAAGGCTCATGGCTTCGGACTCAACTGGTTCTTTTGTGAATGGAGATTTGGGGGAGCTTGGTTACATCGCCCCTGAGTATCCAAGTACTTTGGTTGCTTCATTGAAAGGGGATGTGTATGGCTTTGGTGTTTTGCTTTTGGAGTTAGTGACTGGGCGAAAACCTCTTGATGTGAGCAATGGGGAGGAAGAGTTCAAGGGTAGCTTGGTGGATTGGGTGAACATGCATTCTAGTTTGGGAAGGATCAAGGATTGCATTGATAAAGCCATATGTGGAAGGGGACATGATGAGGAGATTCTACAGTTTCTGAAAATTGCTTTGAATTGTGTGGTTTCTCGCCCCAAGGATAGGTGGTCTATGTACCAGGTTTATCATTCCTTAAAGAACATATCCAAAGACCAGAGTTTCTTTGAACATGATGATGACTTTCCCTTGATCTTTGGTAAGCCAGAAAACGAGGCAGCGCAGTAG 1830 0.4809 MDRSNKFSTSFLLLTLLGFHVFLASSQAEDDVRCLRGIKEALSDPEGRLVPWRFENTTVGFICDFVGVTCWNQRENRVLSLDFRDYKLSGRIPEALKYCGKSLQRLDLGSNSFSSEIPHEICSWMPFLVSLDLSGNQLSGPIPPTLVNCSYLNELMLSDNQLSGSIPFELGSLSRLKKFSVANNRLSGTIPEFFHGFDREGFEGNSGLCGGPLGSKCGGMSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHLSGKRKKKGYGVGSSVGAGGGAGDWALRLRGYKLVQVSLFQKPIVKVKLGDLMAATNNFSGENVLFATRTGTTYKADLPDGSTLAVKRLSACRIGEKQFGMEMNRLGQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLYSLLHKNGGVLDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARLMDFGLARLMASDSTGSFVNGDLGELGYIAPEYPSTLVASLKGDVYGFGVLLLELVTGRKPLDVSNGEEEFKGSLVDWVNMHSSLGRIKDCIDKAICGRGHDEEILQFLKIALNCVVSRPKDRWSMYQVYHSLKNISKDQSFFEHDDDFPLIFGKPENEAAQ* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01409 609 Gene3D Phosphorylase Kinase; domain 1 272 384 - -
Lapu4g01409 609 ProSiteProfiles Protein kinase domain profile. 310 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01409 609 Pfam Leucine Rich Repeat 128 149 IPR001611 GO:0005515
Lapu4g01409 609 Gene3D Ribonuclease Inhibitor 28 219 IPR032675 -
Lapu4g01409 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 385 602 - -
Lapu4g01409 609 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 77 582 - -
Lapu4g01409 609 Gene3D Transferase(Phosphotransferase) domain 1 385 602 - -
Lapu4g01409 609 Pfam Protein tyrosine and serine/threonine kinase 331 522 IPR001245 GO:0004672|GO:0006468
Lapu4g01409 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 28 218 - -
Lapu4g01409 609 SUPERFAMILY L domain-like 28 199 - -
Lapu4g01409 609 Pfam Leucine rich repeat N-terminal domain 28 71 IPR013210 -
Lapu4g01409 609 SUPERFAMILY Protein kinase-like (PK-like) 287 580 IPR011009 -
Lapu4g01409 609 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 272 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01409 Lapu-Chr4 31233239 31236182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01409 11 606 Receptor kinase-like Gene Family AT3G28450 63.245 0.0 767
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Lapu4g01409 PK_Tyr_Ser-Thr 8.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01409 - - gmx:100810378 1040.02