Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01405 ATGGGAAGGCCTCCTTGTTGTGACAAATCCAATGTGAAAAGAGGTCTTTGGACTCCTGAGGAAGATGCTAAAATACTTGCTTATGTAGCCAATCATGGAACTGGAAACTGGACATTGGTTCCAAAGAAAGCAGGGCTGAATAGGTGTGGTAAAAGCTGTAGGCTAAGATGGACCAACTATCTAAGACCTGACCTCAAGCATGACAGTTTTACTCCCCAAGAAGAAGAGCTCATTATTAACCTTCATGGAGCCATAGGAAGCAGATGGTCTTTAATTGCAAGAAGATTACCAGGGAGAACTGACAATGATGTTAAGAACTACTGGAACACAAAGCTAAGGAAGAAGCTTATGAAGATGGGAATTGATCCAGTGACTCATAAGCCAGTATCACAAGTCCTCTCTGACTTGGGAAGCATTAGTGGCCTCCCTAACACCACCACCACTAACCAAATGGCTTTTGTTAACAAGGACTTGATGATGGGCACCATGCTACCAACAACTGAACCATCAGGTTTCAATAAGTCAATGGTGGAGAACACACAAGAGGGTCAAGTTCACTCATGGGACATTCCTTACCAAGTCCCCACCACAGAAAATGTCCAACAACATGTCTTCAGTGAAGCTGCATCCTCCACCTCATCCTCATCTTCCTCCAACCTCACACAGTTAGGCTCTCCACAGTCCTACTCTTGCCAAACCCCTCAGGCTCAAATTGCCCCTCATGGTTCCTCATTTGATTGGAGTGAGTTTCTTCATAGTGACTCGTTTATGTGGTCACTGAACTCCTCAAGTCTAGTGCTAAGTGAAGCTGAACTTTCCAACAATGCCAAAAGCAATGGCCATGACAAACAAGGAGTTGCAGCAATTGAGGGTTGTTATGGTGTAAGCATGGAATATCAAATTAAAAAGCAGTGTGAAGGTCATTCATTTGTGGATGGTATTTTGGATAGGGATAGTGAGTTAAGAGCAGCATTCCCTGAACTTTTGGATGCTTCTTTTGACTACTAA 1008 0.4355 MGRPPCCDKSNVKRGLWTPEEDAKILAYVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELIINLHGAIGSRWSLIARRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISGLPNTTTTNQMAFVNKDLMMGTMLPTTEPSGFNKSMVENTQEGQVHSWDIPYQVPTTENVQQHVFSEAASSTSSSSSSNLTQLGSPQSYSCQTPQAQIAPHGSSFDWSEFLHSDSFMWSLNSSSLVLSEAELSNNAKSNGHDKQGVAAIEGCYGVSMEYQIKKQCEGHSFVDGILDRDSELRAAFPELLDASFDY* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01405 335 CDD SANT 69 112 IPR001005 -
Lapu4g01405 335 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lapu4g01405 335 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lapu4g01405 335 Gene3D - 68 131 - -
Lapu4g01405 335 SMART sant 66 114 IPR001005 -
Lapu4g01405 335 SMART sant 13 63 IPR001005 -
Lapu4g01405 335 CDD SANT 17 61 IPR001005 -
Lapu4g01405 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Lapu4g01405 335 PANTHER F14D16.11-RELATED 1 335 - -
Lapu4g01405 335 MobiDBLite consensus disorder prediction 205 234 - -
Lapu4g01405 335 FunFam Transcription factor RAX3 7 67 - -
Lapu4g01405 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Lapu4g01405 335 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lapu4g01405 335 Gene3D - 7 67 - -
Lapu4g01405 335 FunFam transcription factor MYB80 69 129 - -
Lapu4g01405 335 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lapu4g01405 335 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01405 Lapu-Chr4 31192482 31194175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01405 1 335 MYB Transcription Factor Family AT3G28470 50.862 1.90e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu4g01405 Myb_DNA-binding 4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01405 K09422 - gmx:100815077 550.821