Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01391 ATGGGAAGAGCAGCAAAGATTGTCTTCAGCCTGTTGGTCACTTTGGCCATTACCATCCCATGCCTTGAGGCTGGCATTGCTGAGTTTGATGATTTTCTCAAAGCTCAAGCTGAGGAAGCACATGAAATTGCTCTTCAGTCCTATATCCCAACTCCTGAATTGGTCACCAGTGAAATCAATCACCATGTTCATTTGTCAATGGCAAACACGACGAGGAGGGGACTAGGGCAAGGGAAAAACGGCATTGGAGGACCATGTGAGAGCAGCAACCCCATTGACAATTGCTGGAGGTGCAACAAAGACTGGGCCAAGGACAGGTACCGGTTAGCCAAATGCGGAAAAGGGTTCGGAAGACGCGCAGTGGGAGGGCTCGGTGGACCCATTTATGTGGTCACTGATAACTCCGATGACGACATGGTGAACCCCAAACCAGGAACCATCCGATTCGCAGTGACTCAAAAGGGTCCATTGTGGATCACCTTCGCACGCAGCATGATCATCAGTCTGAGGCAGGAGCTGATGATTTCCTCCGACAAGACCATCGATGGTCGTGGCGCCAACGTTCAATTCAAGGACGGTGCTGGGCTCACTGTTCAGTTCGTGAACAACGTCATCATCCACGGGATTCGCATCAAGAACATTGTGCCTAAGGATGGTGGCATGATCAGGGACTCCTACAACCACGTTGGACTGAGAACCAGGAGTGATGGTGATGCCATCTCCGTTTTCGGAGCCTCCAACATTTGGATCGATCATATTTCCCTCTCTAACTCTGCTGATGGACTTATCGATGTCATCCAAGGCTCCACAGCCATCACCATCTCAAATTGCCACATGACCAGACATAACGACGTGATGCTGTTTGGGGCTACTGACTCCTTCGAAGGAGACAAGATCATGCAGATAACAGTGGCATTCAACCACTTCGGCCAGGGACTGATCCAGAGGATGCCAAGGTGCAGGTGGGGATTCTTTCACGTTCTCAACAACGACTACACTCACTGGATGATGTACGCAATAGGTGGAAGCGCAGGGCCAACGATTCTGAGCCAGGGAAACCGTTTCATTGCTCCCAACAACGATGCTGCAAAGGAGATCACTCACAGGGACTACGCAACTCCAGAAGTGTGGAAGAATTGGCAGTGGCAATCAGAAATGGACCTTTTCATGAACGGTGCAAAGTTCAACACTTCAGGGTCTCCAATCCAGATGAGGAATCACAAAAAGGGTCTCATAATGAAGCCAAGAGATGGCTCTCATGCAATAAGTTTTCTTTCCTCTGATTATATGCCCTTAGACAAATGTGCAATGCTGCAACATTGA 1323 0.4936 MGRAAKIVFSLLVTLAITIPCLEAGIAEFDDFLKAQAEEAHEIALQSYIPTPELVTSEINHHVHLSMANTTRRGLGQGKNGIGGPCESSNPIDNCWRCNKDWAKDRYRLAKCGKGFGRRAVGGLGGPIYVVTDNSDDDMVNPKPGTIRFAVTQKGPLWITFARSMIISLRQELMISSDKTIDGRGANVQFKDGAGLTVQFVNNVIIHGIRIKNIVPKDGGMIRDSYNHVGLRTRSDGDAISVFGASNIWIDHISLSNSADGLIDVIQGSTAITISNCHMTRHNDVMLFGATDSFEGDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVLNNDYTHWMMYAIGGSAGPTILSQGNRFIAPNNDAAKEITHRDYATPEVWKNWQWQSEMDLFMNGAKFNTSGSPIQMRNHKKGLIMKPRDGSHAISFLSSDYMPLDKCAMLQH* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01391 440 Gene3D - 89 427 IPR012334 -
Lapu4g01391 440 PRINTS Pollen allergen Amb family signature 112 129 IPR018082 -
Lapu4g01391 440 PRINTS Pollen allergen Amb family signature 338 357 IPR018082 -
Lapu4g01391 440 PRINTS Pollen allergen Amb family signature 236 257 IPR018082 -
Lapu4g01391 440 PRINTS Pollen allergen Amb family signature 172 188 IPR018082 -
Lapu4g01391 440 PRINTS Pollen allergen Amb family signature 316 335 IPR018082 -
Lapu4g01391 440 PRINTS Pollen allergen Amb family signature 380 404 IPR018082 -
Lapu4g01391 440 PRINTS Pollen allergen Amb family signature 136 161 IPR018082 -
Lapu4g01391 440 Pfam Pectate lyase, N terminus 26 75 IPR007524 GO:0030570
Lapu4g01391 440 SMART amb_all 164 361 IPR002022 -
Lapu4g01391 440 Pfam Pectate lyase 170 355 IPR002022 -
Lapu4g01391 440 PANTHER PECTATE LYASE 18-RELATED 41 420 IPR045032 GO:0030570
Lapu4g01391 440 SUPERFAMILY Pectin lyase-like 90 402 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01391 Lapu-Chr4 30983904 30994641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01391 15 399 Polysaccharide Lyase AT1G14420 60.253 2.51e-172 489