Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01383 ATGAAAATTGCAATTGGTGCTGCTAATGGCATGACATTTTTGCATGAGGAAACTTCAAGACAATTAATATTTCGAGATTTTAAGACATCTAGTATCCTATTGGATAAGGATTACAACACAAAACTTTGGGACTTTGGTCTTGCAAAAGATGCTCCAATGGGACATGGAATCCATGTAGCAACTAAAGTGGTGAGACCAAAAGGCTATGAATCCCCTGAGTATATGATGACAGGACACGTTACTTCCAAGAGCAATGTTTATAGCTTTGGACTGGTTTTACTTGAACTGTTGACAGGAAGAAGAGTGATAGATCAAACAATGCCTACAGAGGAGCAAAACTTGTTAGAATGGTTAGGGCCACGTCTTAAGAACAAAGCAAATTTCCATTATTTGATGGATCCTAGACTTGAAGGCCAATACCCAGCGAAATTTGCTCATAGGACAATGAGGTTAGCTATTCACTGTCTTCGCCATGACCCAAAAACAAGACCCCTTATGAGTGAAGTATTTCGTGAGTTGAAGTCTTTGCATGATGACATGGTTGGTCCCTCAACCTCACTTGGGAGAAAGCATATAGGTCCTTCCAACCATGGTGGTGTTAGTAAGTATGGCCTTGGAATAGGTTCATCATCAAATCTTCCAAGGTGTTTTCAAGCCTTGCCTAAGTTCCAAGACTATCCTCTACCTCTACCTCCATCAAATACTAGTGTTAGAACCACATCCAAATCCTAG 732 0.4044 MKIAIGAANGMTFLHEETSRQLIFRDFKTSSILLDKDYNTKLWDFGLAKDAPMGHGIHVATKVVRPKGYESPEYMMTGHVTSKSNVYSFGLVLLELLTGRRVIDQTMPTEEQNLLEWLGPRLKNKANFHYLMDPRLEGQYPAKFAHRTMRLAIHCLRHDPKTRPLMSEVFRELKSLHDDMVGPSTSLGRKHIGPSNHGGVSKYGLGIGSSSNLPRCFQALPKFQDYPLPLPPSNTSVRTTSKS* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01383 243 PANTHER OS01G0588500 PROTEIN-RELATED 1 177 - -
Lapu4g01383 243 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01383 243 Pfam Protein kinase domain 5 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01383 243 Gene3D Transferase(Phosphotransferase) domain 1 1 185 - -
Lapu4g01383 243 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 1 183 - -
Lapu4g01383 243 SUPERFAMILY Protein kinase-like (PK-like) 2 180 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01383 Lapu-Chr4 30925193 30927143 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01383 1 173 Glycoside Hydrolase AT3G07070 49.133 9.33e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu4g01383 Pkinase 1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01383 - - pvu:PHAVU_004G027200g 401.364