Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01381 ATGGCAACAAAGAATTTTGATTCTAGGAATTTTCTTGGTAGGGGAGGTTTTGGAACTGTGTTCAAAGGTTGGGTTGATGAAAGAGGGAATAATGCAGCAACATCTGGAACAAGGATTCCAGTTGCAGTGAAGACTCTAAACCCAAATGGATTTCAAGGTCATAAACAATGGCTTGCTGAAATTAAATATCTGGGTGAACTCTATCATCCTAATCTAGTAAGATTGGTGGGCTATTGCATGGAGGAAGATAAAAGGGTACTCATATACGAGTATATGTGTCGAGGAAGCTTAGAGAAGTATCTGTTCCAAAGAGGAACTATGAGACTTCCATGGCATATCAGGATGAAAATTGCAATGGAAGCTGCTAATGGTCTGACATATTTGCACGAGGAAGCTTCACGTGCAGTAATATTTCGAGATTTCAAGACATCCAATATCCTATTGGATAAGGACTTCAGTGTAAAACTTTCAGATTTTGGGTTTGCAAAAGATGGTCCAGTGGGAGATAAAAATCATGTATCTACGGAGGTTATGGGAACAGAAGGATATATAGCCCCTGAGTATGTGTTGACAGGGCACCTTACATCAAAGAGTGATGTTTATGGCTTTGGGATGGTTCTCCTTGAAATGTTGACAGGAAGAAGAGCTGTGGATCAAATGAGGCCTGCAAAAGAGAAAAACTTGGTAGATTGGTTGCGTCCTCGTATTAAGAACAAAGAAAATTTTCGTTATGTGATGGATCCTAGATTTGAAGGACAATATCCAATTAAACATGCCTATAGGGCAATGAGGTTGGCCGTTCACTGTCTTCGCCTTGATCCAAGAGCAAGACCCCTTATGAGTGAAGTGGTTGGTGAGTTGAAGTGTTTGGTGGCTCCTGATGATGACATGATTTCTGGTCCCTCAACCTCAGTTGCTTCACCTTCAATCCCTTCAACCTCACTAGGGAGAATTCATGTAGGCCCCTCCAACCATGGTGGTGCTAACAAGTATGGCCTTGGAACTGCTTCAGAACCAAACGTTCCATGCCGTTTTCAAGCCTCACCACTGGGTCTAGACAGCCCTCTAACTCCACCTCCACAGAACCCTAGTGTTGAACCTTAA 1104 0.4248 MATKNFDSRNFLGRGGFGTVFKGWVDERGNNAATSGTRIPVAVKTLNPNGFQGHKQWLAEIKYLGELYHPNLVRLVGYCMEEDKRVLIYEYMCRGSLEKYLFQRGTMRLPWHIRMKIAMEAANGLTYLHEEASRAVIFRDFKTSNILLDKDFSVKLSDFGFAKDGPVGDKNHVSTEVMGTEGYIAPEYVLTGHLTSKSDVYGFGMVLLEMLTGRRAVDQMRPAKEKNLVDWLRPRIKNKENFRYVMDPRFEGQYPIKHAYRAMRLAVHCLRLDPRARPLMSEVVGELKCLVAPDDDMISGPSTSVASPSIPSTSLGRIHVGPSNHGGANKYGLGTASEPNVPCRFQASPLGLDSPLTPPPQNPSVEP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01381 367 MobiDBLite consensus disorder prediction 353 367 - -
Lapu4g01381 367 MobiDBLite consensus disorder prediction 300 323 - -
Lapu4g01381 367 CDD STKc_IRAK 12 288 - -
Lapu4g01381 367 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
Lapu4g01381 367 MobiDBLite consensus disorder prediction 300 319 - -
Lapu4g01381 367 PANTHER OS01G0588500 PROTEIN-RELATED 2 289 - -
Lapu4g01381 367 FunFam Serine/threonine-protein kinase PBS1 92 304 - -
Lapu4g01381 367 ProSiteProfiles Protein kinase domain profile. 6 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01381 367 Pfam Protein tyrosine and serine/threonine kinase 10 287 IPR001245 GO:0004672|GO:0006468
Lapu4g01381 367 Gene3D Transferase(Phosphotransferase) domain 1 92 299 - -
Lapu4g01381 367 ProSitePatterns Protein kinases ATP-binding region signature. 12 44 IPR017441 GO:0005524
Lapu4g01381 367 FunFam Serine/threonine-protein kinase BIK1 1 91 - -
Lapu4g01381 367 MobiDBLite consensus disorder prediction 342 367 - -
Lapu4g01381 367 SUPERFAMILY Protein kinase-like (PK-like) 2 295 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01381 Lapu-Chr4 30905823 30908501 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01381 2 301 Glycoside Hydrolase AT3G07070 50.000 1.75e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu4g01381 PK_Tyr_Ser-Thr 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01381 - - vum:124826044 641.343