Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01380 AGCAATACTTCTGATCAAGAATTATTTGAAGCTTCTTTGCTTCTTCGAAGGTTCACCTTTCAGGATCTTATGTTGGCAACAAGGACTTTTAGGATTGAGGATTTTCATGATGAAGAGGGGTTTGGAACTTTGTTGAAAGGTTGGATCAATCCATATGGGAACTATGCAGCAAGACCTGGAAGAGGGATTCCAATTGCAGATGAAATTAGTTATCTCAGTGAACTCAATCATCTAAATCTGGTTAAAATAGTAGGCTTTTGCATTGAGGATGACAAAAGACTACTAGTACATGAGTACATGTGTCAAGGAAGCTTAGAGAAGCATCTATTCAGCAGTATGTCCTAA 345 0.3797 SNTSDQELFEASLLLRRFTFQDLMLATRTFRIEDFHDEEGFGTLLKGWINPYGNYAARPGRGIPIADEISYLSELNHLNLVKIVGFCIEDDKRLLVHEYMCQGSLEKHLFSSMS* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01380 114 Gene3D Phosphorylase Kinase; domain 1 1 99 - -
Lapu4g01380 114 PANTHER OS01G0588500 PROTEIN-RELATED 14 111 - -
Lapu4g01380 114 Pfam Protein tyrosine and serine/threonine kinase 66 110 IPR001245 GO:0004672|GO:0006468
Lapu4g01380 114 SUPERFAMILY Protein kinase-like (PK-like) 6 111 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01380 Lapu-Chr4 30892063 30892796 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01380 3 114 Receptor kinase-like Gene Family AT1G56120 37.815 8.78e-16 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lapu4g01380 PK_Tyr_Ser-Thr 5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01380 - - var:108344548 199.519