Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01378 ATGGCCTTCCCTCCCTCTCACACCTTCATGTTCCAAACCCATGAAGATCATGACCACCCCCAACTCCACCTACGCTCTACCTCTTCCTCCCTCAACGCCTTCCCCTCTTTCCCACCCCATCACTTTCAAGGTAAAGGAAGGGGTGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGAGTTGTCAGATGATGGATCTCAGCTAGGGGAGAAGAAGAAAAGGCTGAGTTTGGAGCAGGTGAAGGCACTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGGCTTCAACCAAGACAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACAAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAGCAGTTTGAAGCTGTGAAAGCTGATAATGACTCCCTCAAGGCTCAGAATCAGAAACTACATGCAGAGCTACAAACTCTAAAAAATAGGGACTGCTGTGAAACCGGAACAGTTAGCCTCAAGAAAGAAGCTGAGGCTTCTTGGAGCAATGGCAGCAACAACAGCTCAGAAATCAACTTGGACCTCTCAAGAACACCAGTGATGAACAGTCCTGTGTCTTCTCAGAATGGAAAAAGCCTTCTACCAACTTCCCTTAAGCCAACAAGCATAACTCAACTCCTCCAATGCTCATCAAGATCAGATCTCCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGCCTGAGCAGCAGCACCAGTTTCATTAA 849 0.4723 MAFPPSHTFMFQTHEDHDHPQLHLRSTSSSLNAFPSFPPHHFQGKGRGGAGFMMKRSMSFSGIENKCDEVHGDDELSDDGSQLGEKKKRLSLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEVLKKQFEAVKADNDSLKAQNQKLHAELQTLKNRDCCETGTVSLKKEAEASWSNGSNNSSEINLDLSRTPVMNSPVSSQNGKSLLPTSLKPTSITQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWPEQQHQFH* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01378 282 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Lapu4g01378 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 274 IPR045224 GO:0003700
Lapu4g01378 282 CDD homeodomain 86 142 IPR001356 GO:0003677
Lapu4g01378 282 SUPERFAMILY Homeodomain-like 77 143 IPR009057 -
Lapu4g01378 282 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Lapu4g01378 282 Pfam Homeobox associated leucine zipper 141 181 IPR003106 GO:0006355|GO:0043565
Lapu4g01378 282 Gene3D - 78 157 - -
Lapu4g01378 282 FunFam Homeobox-leucine zipper protein ATHB-13 78 145 - -
Lapu4g01378 282 SMART HOX_1 84 145 IPR001356 GO:0003677
Lapu4g01378 282 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Lapu4g01378 282 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Lapu4g01378 282 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Lapu4g01378 282 Coils Coil 133 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01378 Lapu-Chr4 30865345 30868563 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01378 1 276 Homeobox Transcription Factor Family AT5G15150 52.632 3.81e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu4g01378 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01378 K09338 - gmx:100790803 515.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g01378 4 30865345 30868563 Lapu1g01355 1 26368782 26370796 PCT