Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01368 ATGGGAAGGCCACCTTGTTGTGATAAAGGTGTGAAGAAAGGACCTTGGACTCCTGAAGAAGATATCATTTTGGTGTCTTACATACAGGAGCATGGTCCTGGAAATTGGAAGGCCGTTCCTGCCAATACTGGGTTGTCAAGGTGCAGCAAGAGTTGTAGACTGAGATGGACTAATTATCTGAGGCCTGGAATCAAAAGGGGTAACTTCACTGAACAAGAGGAGAAGATGATCATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCCATAGCTGCATACCTGCCGCAAAGAACAGATAATGACATAAAAAACTATTGGAACACCTATTTGAAGAAGAAACTGAACAAATTAGAAGCAAGTGGTTCAGAGGGAAGCTTGGGACATGTTGGGGTTTCAGTTTCTCAGTCAATGTCTAGAGGCCAGTGGGAAAGAAGGCTTCAAACAGATATCCACATGGCTAAGAAAGCTCTCAGTGAAGCTCTTTCACCAAAGAAGACATCATCTACCTTGTTAGCTGAGTTAAATTCAAACCTTTCCAGTGATAACACTGGCTCCTTCTATAACTCCACCAAACCAACACAATCCATAAGCTATGCCTCAAGTGCTGACAACATAGCTCGTTTGTTGAAGGGTTGGATGAAAAACACTCCAAAACCCTCATGTGCTGCCACTCAAAATTCCTTCATCAACTTGGCTGGTGCAGGAGCTGACACTGCTTCCAGTGAAGGAACAACAAAGGAGAGCACAAACAGTGTCGAATTGTCTGAGACTTTTGAGACCTTGTTTGGTTATGAGTCTTTGGAGTCTTCAAATTCTGAGTTTTCACCATCTCTTTCTCCCGAGGGAACTCTTTTCCAAGATGAGAGCAAACCAGATATTACTGGAATAGACATGCCTTTCTCTTTGCTTGAGAAATGGCTTCTGGATGATGCTGGTTGCCAAGAAAAACTTAGCTTCTAG 963 0.433 MGRPPCCDKGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEASGSEGSLGHVGVSVSQSMSRGQWERRLQTDIHMAKKALSEALSPKKTSSTLLAELNSNLSSDNTGSFYNSTKPTQSISYASSADNIARLLKGWMKNTPKPSCAATQNSFINLAGAGADTASSEGTTKESTNSVELSETFETLFGYESLESSNSEFSPSLSPEGTLFQDESKPDITGIDMPFSLLEKWLLDDAGCQEKLSF* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01368 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Lapu4g01368 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 247 - -
Lapu4g01368 320 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Lapu4g01368 320 SMART sant 65 113 IPR001005 -
Lapu4g01368 320 SMART sant 12 62 IPR001005 -
Lapu4g01368 320 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Lapu4g01368 320 CDD SANT 68 111 IPR001005 -
Lapu4g01368 320 CDD SANT 15 60 IPR001005 -
Lapu4g01368 320 Gene3D - 12 65 - -
Lapu4g01368 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Lapu4g01368 320 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Lapu4g01368 320 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Lapu4g01368 320 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Lapu4g01368 320 MobiDBLite consensus disorder prediction 272 291 - -
Lapu4g01368 320 FunFam MYB-related transcription factor 12 65 - -
Lapu4g01368 320 Gene3D - 67 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01368 Lapu-Chr4 30685193 30686533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01368 1 311 MYB Transcription Factor Family AT5G62470 52.408 1.33e-105 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu4g01368 Myb_DNA-binding 3.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01368 K09422 - gmx:780542 496.893