Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01366 ATGGAGATAATAACACCAACGCCACCACCAACAACCGTCACTGCAACAAACGCAGCCGCGAAATCGCCGGAACTCGACATAGAGACTCCGACCCGGATCCACCAAACCGCCGGAAACTCGAATCCGAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAATCACCGCGCCGCCGCCGTGGTTTACAAGGAATGCTTGAAGAACCACGTCGCCAGCTTAGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCGCCGGCGGCAAGCCCCGACGATCCCAGCTCTATCAAATGCGCCGCCTGCGGCTGCCATCGTAACTTCCACCGCCGCGAGCCAGAGGAGCCGCCAATTTCTCCGGTGACGCATCATGTTCTGGAGTACCAGCCCCACCACCGTCATCACCCTCCTCCTCCGCCGCCTCACCGGAGTCCGAACTCCGCCTCTCCGCCGCCGATCTCCTCTTACCCCTCCGCACCCCACATGCTCCTCGCCCTCTCCAGCGGCGGAGGCCTCTCCGTGGCGCCGGAAAACACCGCCGCGCCGGCTCCGGCGCACCACTCCCGGAAGCGCTTCCGCACGAAATTCACCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGACAAAGTGGGGTGGAAGATGCAGAAACGCGACGAAAACATGGTTATGGAGTTTTGCAACGAGGTTGGTGTGGACAGAGGAGTCCTCAAAGTGTGGATGCACAACAACAAGAACACTCTCGCCAAAAAAGACAACCTTAATGGTAACGCTGCTATCGTCACTGCCAACGGGATTAACCATGTCCCCACAGTTAACAAAGCTAATGTCCTCGAACATGAACGCGGTGGCGGAATCAACGGCAACACCAACAACAGCCACGACCACAACCTCGGTTCTTCTCATGATGTGAACGAGTACGAGAATGATAGCGGAACAAACGGTGGTGGAACAAATGGCTCTTCTTCTTCTTCTTGA 999 0.5816 MEIITPTPPPTTVTATNAAAKSPELDIETPTRIHQTAGNSNPSPKPVSFSNGVLKRHHANHRAAAVVYKECLKNHVASLGGHALDGCGEFMPSPAASPDDPSSIKCAACGCHRNFHRREPEEPPISPVTHHVLEYQPHHRHHPPPPPPHRSPNSASPPPISSYPSAPHMLLALSSGGGLSVAPENTAAPAPAHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDENMVMEFCNEVGVDRGVLKVWMHNNKNTLAKKDNLNGNAAIVTANGINHVPTVNKANVLEHERGGGINGNTNNSHDHNLGSSHDVNEYENDSGTNGGGTNGSSSSS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01366 332 Gene3D - 182 258 - -
Lapu4g01366 332 MobiDBLite consensus disorder prediction 147 164 - -
Lapu4g01366 332 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 255 - -
Lapu4g01366 332 Pfam ZF-HD protein dimerisation region 66 120 IPR006456 -
Lapu4g01366 332 MobiDBLite consensus disorder prediction 1 27 - -
Lapu4g01366 332 MobiDBLite consensus disorder prediction 136 168 - -
Lapu4g01366 332 MobiDBLite consensus disorder prediction 292 332 - -
Lapu4g01366 332 SUPERFAMILY Homeodomain-like 186 257 IPR009057 -
Lapu4g01366 332 FunFam Zinc-finger homeodomain protein 2 184 257 - -
Lapu4g01366 332 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 68 119 IPR006456 -
Lapu4g01366 332 NCBIfam homeobox domain, ZF-HD class 196 253 IPR006455 -
Lapu4g01366 332 MobiDBLite consensus disorder prediction 288 332 - -
Lapu4g01366 332 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 119 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01366 Lapu-Chr4 30616546 30618123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01366 1 252 ZF-HD Transcription Factor Family AT5G15210 50.193 1.26e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu4g01366 ZF-HD_dimer 5.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01366 - - gmx:100814730 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g01366 4 30616546 30618123 Lapu1g01348 1 26242330 26243844 PCT