Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01355 ATGAATGCAATGGAGAACAATAATCACAGAGACACAATGGCAGAGCAAAGGTTTGAATTGCCACCAGGGTTCAGGTTCCATCCAACAGATGAAGAACTCATCACTCATTACCTCTCACAGAAGGTTCTTGATAGCTGCTTCTGTGCTAGGGCCATTGGAGAGGCTGATTTGAACAAGTGTGAACCATGGGATTTGCCTTGTATGGCCAAAATGGGTGAAAAGGAGTGGTATTTTTTCTCTGTGAGGGACAGAAAGTACCCAACTGGTCAAAGGACTAATAGGGCCACTGGTGCTGGTTATTGGAAGGCCACAGGCAAAGACAAAGAGATATACAAGGCAAAGACCCTTATTGGGATGAAGAAAACTCTGGTTTTCTACAAAGGAAGAGCTCCAAGTGGTGAAAAAACAAACTGGGTCATGCATGAATACAGATTAGAAAATGATCATTCTATGCACAATCCACACAAAAAGGCCATGAATGACTGGGCCATCTGCAGGATTTTTGAGAAGACTAACTGTGGCAAGAAAATGCAGATTTCTGGTTTGGTGAGGTTGACCTCCTTTGGGAAGGACATGCCTTCATTGATGGATTCTTCTCCATACAACACCAGTGAAACAAAGCCTGTTTTGGGGGAGTCATCACACTTCTCAGATCCAAATCAAAGTGAGGACCTAAGGACACAGGATGAAAACATAGTTGATAGCCTAGAAACTCTCATGATGGCATCATCATCATCATATTCTTCAAACCCCTTTGATGTTTCCCCTGCTTCATGGACTTTTGCCAAATCTGTCCCTACTATGCCCCACCAATCCCTCCAAGTTGGGAACTCACACTGCTCAGACTATTTCATGGATCAGGAACAGTCCATGTTGCTGATTGAAAACCATGGATCAAGTATTGGTCTAAGAACTCATAAAGCACAGGATAAAGACTTTGATGCTGACATGTCCTCTCTGATGTACACAGATGAAATGTTTCAAAGATCATTTGGGAACCAGGAATATTCATCACCTTCTCTAGGACATGTGTATAGTAGTGGCCTATGGGGATTCTAA 1059 0.4287 MNAMENNNHRDTMAEQRFELPPGFRFHPTDEELITHYLSQKVLDSCFCARAIGEADLNKCEPWDLPCMAKMGEKEWYFFSVRDRKYPTGQRTNRATGAGYWKATGKDKEIYKAKTLIGMKKTLVFYKGRAPSGEKTNWVMHEYRLENDHSMHNPHKKAMNDWAICRIFEKTNCGKKMQISGLVRLTSFGKDMPSLMDSSPYNTSETKPVLGESSHFSDPNQSEDLRTQDENIVDSLETLMMASSSSYSSNPFDVSPASWTFAKSVPTMPHQSLQVGNSHCSDYFMDQEQSMLLIENHGSSIGLRTHKAQDKDFDADMSSLMYTDEMFQRSFGNQEYSSPSLGHVYSSGLWGF* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01355 352 MobiDBLite consensus disorder prediction 196 221 - -
Lapu4g01355 352 MobiDBLite consensus disorder prediction 196 226 - -
Lapu4g01355 352 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 19 257 - -
Lapu4g01355 352 SUPERFAMILY NAC domain 14 170 IPR036093 GO:0003677|GO:0006355
Lapu4g01355 352 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Lapu4g01355 352 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Lapu4g01355 352 FunFam NAC domain-containing protein 100-like 29 174 - -
Lapu4g01355 352 Gene3D NAC domain 29 174 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01355 Lapu-Chr4 30445103 30447017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01355 19 352 NAC Transcription Factor Family AT5G07680 51.765 4.77e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu4g01355 NAM 4.8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01355 - - gmx:100785620 601.282