Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01352 ATGCTACCAAATCAAATGTGCAATGACCCACAGTGGTGCCTCCCTGGCACCATTGTAGTCACTGCCACTAATTTCTGCCCCCCTGGTGGATGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTTTTTCAGCAAATTGCTCAATACAAAGCTGGTATTGTTCCTGTAGTTTATAGAAGGGTAAGGTGCAGAAGAAGGGATGGAATCAGGTTCACCATCAATGGTCATTCATACTTCAACTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTCTGTCCATCAAAGGTTCAAGGAGTAGATGGCAAGCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAATTCCTACCTTAATGGACAGAGTCTCTCCTTTTTGGTCACCACAAGTGATGGCCGAAGTGTGCTGTCATACAATGCTGCACCACCAAGTTGGTCCTTTGGACAGACCTACATTGGAAGGCAATTCCGCTACTAA 498 0.4618 MLPNQMCNDPQWCLPGTIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVVYRRVRCRRRDGIRFTINGHSYFNLVLVTNVGGAGDVHSLSIKGSRSRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSDGRSVLSYNAAPPSWSFGQTYIGRQFRY* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01352 165 Gene3D - 4 67 IPR036908 -
Lapu4g01352 165 Pfam Expansin C-terminal domain 72 149 IPR007117 -
Lapu4g01352 165 FunFam Expansin 71 163 - -
Lapu4g01352 165 SUPERFAMILY Barwin-like endoglucanases 8 89 IPR036908 -
Lapu4g01352 165 SUPERFAMILY PHL pollen allergen 71 159 IPR036749 -
Lapu4g01352 165 PANTHER EXPANSIN-A15 6 163 IPR002963 GO:0009664
Lapu4g01352 165 PRINTS Expansin/Lol pI family signature 108 122 IPR007118 GO:0005576
Lapu4g01352 165 PRINTS Expansin/Lol pI family signature 54 70 IPR007118 GO:0005576
Lapu4g01352 165 PRINTS Expansin/Lol pI family signature 146 160 IPR007118 GO:0005576
Lapu4g01352 165 PRINTS Expansin signature 82 103 IPR002963 GO:0009664
Lapu4g01352 165 PRINTS Expansin signature 6 17 IPR002963 GO:0009664
Lapu4g01352 165 PRINTS Expansin signature 29 46 IPR002963 GO:0009664
Lapu4g01352 165 PRINTS Expansin signature 117 138 IPR002963 GO:0009664
Lapu4g01352 165 PRINTS Expansin signature 46 59 IPR002963 GO:0009664
Lapu4g01352 165 PRINTS Expansin signature 70 82 IPR002963 GO:0009664
Lapu4g01352 165 PRINTS Expansin signature 146 162 IPR002963 GO:0009664
Lapu4g01352 165 PRINTS Expansin signature 18 28 IPR002963 GO:0009664
Lapu4g01352 165 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 81 160 IPR007117 -
Lapu4g01352 165 Pfam Lytic transglycolase 11 61 IPR009009 -
Lapu4g01352 165 Gene3D - 71 163 IPR036749 -
Lapu4g01352 165 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 7 71 IPR007112 -
Lapu4g01352 165 SMART dpbb_1 2 61 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01352 Lapu-Chr4 30385962 30387826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01352 6 165 Expansin Gene Family AT3G29030 81.481 1.15e-98 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01352 K20628 - gmx:100799370 311.227