Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01351 ATGGAACGTGTCTCTCTATCTTACTTCCCCTCTGCTTATTCTCACTACCTAGCTCAGCTCCCACTTTCACTTCCTTCCAACTATAACATGGCTGAGGAACTGGATAAACCATTGCTTGATCCTGAGAATTTCAACCGAGATGGCATTGATTTGGAGCGTATACCATTAGAAGAAGTATTTGAACAGTTGAGAACATCACGAAGAGGACTTTCATCTGACGATGCTGAAGCTCGAATAGAGATATTTGGCCCAAACAAACTTGAAGAGAAGAAAGAGAATAAAGTATTGAAATTTCTTGGTTTTATGTGGAATCCTTTATCATGGGTTATGGAAGCAGCAGCATTGATGGCGATTATCCTTGCTAATGGTGGAGGGGAAGGTCCTGATTGGCAAGACTTTATAGGGATTATATGCCTACTGGTAATAAACTCAACTATTAGTTTTATAGAAGAAAATAATGCAGGTAATGCTGCAGCAGCATTAATGGCTCGTTTAGCTCCTAAAACAAGGGTTCTCAGAGATGGGCAGTGGCAAGAACAAGATGCAGCTATTTTAGTACCTGGAGATATAATTAGCATAAAATTGGGAGATATAGTTCCAGCTGATGCTCGCTTGCTAGAAGGGGATCCTCTAAAAATTGATCAGTCAGCCCTTACTGGAGAATCATTACCTGTTACAAAAAGAACTGGTGATGAGGTCTTTTCCGGTTCAACATGTAAACATGGAGAGATTGAGGCTGTAGTGATTGCAACAGGAGTTCACTCCTTCTTTGGAAAGGCAGCATATCTGGTTGACAGTACTGAAGTTGTTGGACATTTTCAGAAGGTCCTTACCTCAATTGGTAACTTCTGCATTTGCTCTATAGCTATAGGGATACTTTTTGAAATAATTATAATGTTCCCAGTGGAGCATCGATCATACAGGGATGGAATCAACAATCTTCTTGTTCTCCTGATTGGAGGAATACCCATCGCTATGCCAACGGTATTATCTGTAACACTTGCAATTGGCTCTCACCGTCTTTCTCAGCAGGGAGCTATCACAAAAAGAATGACAGCAATTGAAGAAATGGCAGGCATGGATGTGCTCTGCAGTGACAAAACTGGAACTCTTACACTGAATCGCCTGACTGTTGATCGAAACCTTATTGAGGTTTTTAATAGAAACATGGACAAAGATACGGTGATTCTGTTAGCAGCCAGAGCAGCTAGACTGGAAAACCAGGATGCAATTGATACTGCAGTAGTTAATATGCTAGCTGATCCAAAGGAGGCACGTGCAAACATCACTGAAGTTCATTTTTTACCATTCAATCCTGTAGATAAACGTACAGCTATAACGTATATTGATTCTGATGGCAATTTTTATAGGGCCAGTAAAGGAGCTCCAGAACAGATTCTAGATTTGTGTCAAGAGAAAGACCAAATTGCAAAAAAAGTGCACAATATAATAGACAAATTTGCTGAAAGGGGATTGCGATCTCTTGCAGTTGCTTATCAGGAAGTTCCTGAAAAATCCAAGGATAGCCCTGGAGGTCCTTGGACTTTTTGTGGATTGTTGCCTTTGTTTGATCCACCAAGACATGATAGTGCTGAGACCATCCGAAGAGCACTTAACCTTGGAGTCTGTGTTAAGATGATTACAGGTGATCAATTAGCAATTGCAAAGGAAACAGGTCGAAGACTTGGCATGGGAACAAACATGTACCCTTCTTCATCTTTGTTAGGGCGCGAAAAAGAAGAGCATGAAGCTCTCGCTGTAGATGAGCTCGTTGAAATGGCAGATGGCTTTGCTGGTGTTTATCCTGAACACAAGTACGAAATAGTGAAAATTTTACAAGAAAAGAAACATGTTGTTGGAATGACTGGGGATGGAGTAAATGATGCCCCAGCATTGAAGAAAGCAGATATCGGAATAGCTGTGTCAGATGCTACAGATGCTGCAAGAAGTGCTGCTGATTTGGTCTTAACCGAGCCTGGCTTAAGTGTCATTATTAGTGCTGTGTTAACTAGCAGAGCTATATTCCAAAGAATGAAAAATTATACAATATATGCAGTCTCTATCACCATAAGGATAGTGCTTGGTTTTACTCTCCTGGCATTAATTTGGGAGTATGATTTTCCACCCTTCATGGTCTTGATCATTGCAATACTAAATGATGGTACCATCATGACCATATCTAAAGACAGAGTGAAGCCATCACCTACACCTGACAGTTGGAAGCTACCAGAGATATTTGCAACAGGAATAGTGATTGGAACTTATCTTGCTTTGGTTACTGTCTTGTTCTATTGGGCAATAGTTGAGACAACTTTCTTTGAGACCCACTTCCATGTAACCTCCTTATCTAGTGACAGCGAGAAAGTTTCATCAGCTGTATATCTGCAAGTTAGCATCATTAGTCAGGCTCTAATTTTTGTTACTCGTAGCTATGGATGGTCATTTCTAGAGAGACCCGGAGTTCTGCTGATGTTCGCCTTTGTAATAGCTCAACTGGTGGCGACCTTAATTGGTGTGTATGCAAATATCAGTTTTGCTAAGATTAGCGGAATTGGATGGGAATGGGCTGGTGTTATATGGTTATACAGTTTAATCTTCTATGTCCCCTTGGACATCATTAAGTTCACAGTGCGTTATGCCTTGACTGGAGATGCCTGGAAACTCCTATTTGAAAGAAAGACTGCTTTTACATCTAAGAAAGACTACGGAAAAGAAGATAGGGCTGCAAAGTGGGTTCTTTCTCAAAGGACTCTACAGGGACTGGATCTCATGGCTGGAGGCCTGGAGGTCAATGGAAGGCGTTCTTCTATCATAGCTGAACAGGCCAGAAGACGTGCTGAAATAGCCAGGCTGGGGGAGTTACACACTCTCAGAGGACATGTTGAGTCTGTTGTCAGACTCAAAAACTTGCATCGCAATGTCATCCAAGCAGCTCATACAGTCTGA 2946 0.4138 MERVSLSYFPSAYSHYLAQLPLSLPSNYNMAEELDKPLLDPENFNRDGIDLERIPLEEVFEQLRTSRRGLSSDDAEARIEIFGPNKLEEKKENKVLKFLGFMWNPLSWVMEAAALMAIILANGGGEGPDWQDFIGIICLLVINSTISFIEENNAGNAAAALMARLAPKTRVLRDGQWQEQDAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKRTGDEVFSGSTCKHGEIEAVVIATGVHSFFGKAAYLVDSTEVVGHFQKVLTSIGNFCICSIAIGILFEIIIMFPVEHRSYRDGINNLLVLLIGGIPIAMPTVLSVTLAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNRLTVDRNLIEVFNRNMDKDTVILLAARAARLENQDAIDTAVVNMLADPKEARANITEVHFLPFNPVDKRTAITYIDSDGNFYRASKGAPEQILDLCQEKDQIAKKVHNIIDKFAERGLRSLAVAYQEVPEKSKDSPGGPWTFCGLLPLFDPPRHDSAETIRRALNLGVCVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGREKEEHEALAVDELVEMADGFAGVYPEHKYEIVKILQEKKHVVGMTGDGVNDAPALKKADIGIAVSDATDAARSAADLVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFTLLALIWEYDFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLPEIFATGIVIGTYLALVTVLFYWAIVETTFFETHFHVTSLSSDSEKVSSAVYLQVSIISQALIFVTRSYGWSFLERPGVLLMFAFVIAQLVATLIGVYANISFAKISGIGWEWAGVIWLYSLIFYVPLDIIKFTVRYALTGDAWKLLFERKTAFTSKKDYGKEDRAAKWVLSQRTLQGLDLMAGGLEVNGRRSSIIAEQARRRAEIARLGELHTLRGHVESVVRLKNLHRNVIQAAHTV* 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01351 981 NCBIfam HAD-IC family P-type ATPase 136 384 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01351 981 NCBIfam HAD-IC family P-type ATPase 597 703 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01351 981 SUPERFAMILY Calcium ATPase, transduction domain A 167 263 IPR008250 -
Lapu4g01351 981 Gene3D - 376 523 IPR023299 GO:0000166
Lapu4g01351 981 SUPERFAMILY HAD-like 360 669 IPR036412 -
Lapu4g01351 981 PRINTS H+-transporting ATPase (proton pump) signature 622 638 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01351 981 PRINTS H+-transporting ATPase (proton pump) signature 480 498 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01351 981 PRINTS H+-transporting ATPase (proton pump) signature 653 678 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01351 981 PRINTS H+-transporting ATPase (proton pump) signature 594 610 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01351 981 PRINTS H+-transporting ATPase (proton pump) signature 794 815 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01351 981 PRINTS P-type cation-transporting ATPase superfamily signature 214 228 - -
Lapu4g01351 981 PRINTS P-type cation-transporting ATPase superfamily signature 540 550 - -
Lapu4g01351 981 PRINTS P-type cation-transporting ATPase superfamily signature 645 657 - -
Lapu4g01351 981 PRINTS P-type cation-transporting ATPase superfamily signature 518 529 - -
Lapu4g01351 981 PRINTS P-type cation-transporting ATPase superfamily signature 364 378 - -
Lapu4g01351 981 PRINTS P-type cation-transporting ATPase superfamily signature 622 641 - -
Lapu4g01351 981 Gene3D - 933 981 - -
Lapu4g01351 981 SMART Cation_ATPase_N_a_2 50 122 IPR004014 -
Lapu4g01351 981 SUPERFAMILY Calcium ATPase, transmembrane domain M 49 880 IPR023298 -
Lapu4g01351 981 Gene3D - 361 659 IPR023214 -
Lapu4g01351 981 SFLD p-type atpase 346 673 IPR044492 -
Lapu4g01351 981 PANTHER CALCIUM-TRANSPORTING ATPASE 53 917 - -
Lapu4g01351 981 FunFam ATPase 4 plasma membrane-type 609 849 - -
Lapu4g01351 981 FunFam Plasma membrane ATPase 376 523 - -
Lapu4g01351 981 Gene3D - 167 251 - -
Lapu4g01351 981 Pfam haloacid dehalogenase-like hydrolase 360 636 - -
Lapu4g01351 981 Pfam E1-E2 ATPase 165 343 - -
Lapu4g01351 981 FunFam Plasma membrane ATPase 516 670 - -
Lapu4g01351 981 SFLD C1.7: P-type atpase like 346 673 - -
Lapu4g01351 981 CDD P-type_ATPase_H 69 875 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lapu4g01351 981 NCBIfam plasma-membrane proton-efflux P-type ATPase 69 840 IPR006534 GO:0008553|GO:0016020|GO:0120029
Lapu4g01351 981 ProSitePatterns E1-E2 ATPases phosphorylation site. 366 372 IPR018303 -
Lapu4g01351 981 Gene3D - 129 849 - -
Lapu4g01351 981 FunFam Plasma membrane ATPase 167 251 - -
Lapu4g01351 981 Pfam Cation transporter/ATPase, N-terminus 54 116 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01351 Lapu-Chr4 30344625 30353538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01351 30 981 Primary Pumps ATPases AT1G17260 80.567 0.0 1550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01351 K01535 - gmx:100795836 1672.52