Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01340 ATGGCAAGGAAGAGAAAGGTTGCTGAAGTAGTGGAAGAGAGAAACATATGTGAGGGAACCATGGCTTGGGAGGAGATGATGAAACAAGCTGCAGCACTTGGAGGAGTCCAAAGAGCCAGGAAGAGGTTTGTTGGGGTGAGGCAAAGGCCATCAGGTAGATGGGTGGCTGAGATCAAAGACACCATTCAGAAGATAAGAGTGTGGTTGGGGACTTTTGACACTGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCTTGTTTGCTTAGAGGTGCAAATACAAGGACAAACTTCTGGCCATGCTCCCAATCCTCCACAAGTCCTGCTCTTTCCTCAAAAATCACCAATCTCCTTCTTCAAAGGCTTAAAGAAAGGAACAAGAACACCTTCTCCTCTTCCTCCTCCTCCTCCTCCACCTCACTTCTCATCAACCACCAACATATGCAACAAGAAGTTGATGCATATGGTGATGGATCAACACAATTCTCAATTGACCAATTTACTGATTTTCTCAATGACCCTGAAGATTATTGGACAAGCAACTATGACTTCGTCAACAACAGTGCACAAATGGACTACATTACAAGCAGTTTTGAATCATGTTTAACTGAAAAGGATGGGGGGACAAAAGTGGATGTGCAATACAAAACCAGCATTGGGACACCACAGACTTCAAGTAATGACAGCAATTCAGGAGTGGAGGACAGTGAAGAAGAAGGCACTGATTTGGGTGTCCAAAGCACTAACTTGGATGTCCATGACTTTAGGTTTCTAGACAACATTGCTCCACCTAGTTACTATTCTCCTTTTGAGATGGCTGAAGAGATGGAGGAGCCTGTGGAGCCAGAGAACTATGGTGGTGATGAGCCTTCAATGCTTAGAGCTGTCATGAAGAGAATGACATATGAGAGGAAGTTCTCAGCCTCTCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAGCTTGAATCAGGCAACATGAAGGGAAGAGGAATAACTGATCAATTAACCAGCCTCCAAATGGCTTGCAGCAAAAACAAACTTGAGAAGAATGAGGAGGAGAAAGAGTACATGGGAGCAATGGATAGGAAACAAGAACACCACCAACAAACAACAACTGACATGGATTCTTCTGGTGCTGACGGGGAACTATTACTTTGGAATTCATTAGATCTTCCTCCAATTTGCTTTGTTAACTTGTTAGAAAACGGATCATTCAATTAG 1230 0.4374 MARKRKVAEVVEERNICEGTMAWEEMMKQAAALGGVQRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNKNTFSSSSSSSSTSLLINHQHMQQEVDAYGDGSTQFSIDQFTDFLNDPEDYWTSNYDFVNNSAQMDYITSSFESCLTEKDGGTKVDVQYKTSIGTPQTSSNDSNSGVEDSEEEGTDLGVQSTNLDVHDFRFLDNIAPPSYYSPFEMAEEMEEPVEPENYGGDEPSMLRAVMKRMTYERKFSASLYAFNGIPECLKLKLESGNMKGRGITDQLTSLQMACSKNKLEKNEEEKEYMGAMDRKQEHHQQTTTDMDSSGADGELLLWNSLDLPPICFVNLLENGSFN* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01340 409 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Lapu4g01340 409 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Lapu4g01340 409 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Lapu4g01340 409 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Lapu4g01340 409 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 307 - -
Lapu4g01340 409 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Lapu4g01340 409 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Lapu4g01340 409 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Lapu4g01340 409 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Lapu4g01340 409 MobiDBLite consensus disorder prediction 217 231 - -
Lapu4g01340 409 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Lapu4g01340 409 MobiDBLite consensus disorder prediction 217 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01340 Lapu-Chr4 30256273 30257502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01340 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.60e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu4g01340 AP2 8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01340 K09286 - gmx:100786711 704.516