Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01338 ATGGGTTGCATTAGCTCCAAAAATGTGGTTGCCAAGACTTATTCTCCATCCCCATCAATGGTGGAAATTTCAGAGGTCATTCACACTTCCACCAAGGGACATTCTGGATTGACCATTTTGGATTCAAAACTGAATTTAGATAATGAGAGGAACAACAAGTTTAAAAAAAATAGTTCAAAGAAAAGTAATGGGTCTTTTGGCTTTAGGCTTGGATTGGCTCAAAGGAATGTTGAGGTTGAACAAAATGCTGCTGGTTGGCCTCCTTGGCTAACTGCTGTTGCAGCAGAAGCCATTCAAGGATGGATTCCCCTCAAAGCTGATTCTTTTCAAAAGTTAGAAAAGATTGGTCAAGGTACATATAGTAGTGTGTTTCGAGCTCGTGAAGTTGAAACTGGGAAGATGTTTGCTTTGAAAAAGGTGCGCTTTGACAATTTTCAACCTGAGAGCATTAGGTTTATGGCAAGAGAAATAACGATCCTTCGTAGGCTTGATCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCTCGCTTATCAAATAGCATATACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTGTCAAACCCTGATATTGTGTTCACTGAATCACAGATAAAATGTTACATGAGGCAACTTTTAAGTGGACTGGAGCATTGTCATATGCGTGGTATTATGCATAGAGACATCAAAGTATCAAATATCTTGTTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATCAGTACAAATAACAAACATCACTTGACAAGTCGTGTTGTGACTTTGTGGTATCGTCCTCCAGAATTACTGATGGGATCAACCAATTATGGAGTGTCAGTGGATCTATGGAGTGTTGGTTGTGTATTTGCAGAACTTTTTCTTGGAAAGCCTATCCTTAAGGGGAGAACTGAGGTTGAACAATTGCACAAAATTTTCAAGTTGTGTGGTTCTCCACCTGAGGAGTTCTGGAAAAAGTCCAAACTTCCTCATGCAACAATGTTTAAGCCCCAAACAAATTATGAAAGCTCTCTTCGAGAAAGATGTGCAGATTTTCCTACATCTGCTATAAACCTACTTGAGACTTTATTATCTATTGACTCAAGCAATCGAGGAACTTCCTCCTCTGCCTTAATGTCCGAGTATTTTAACAGTAAGCCATATGCTTGTAACCCATCAAATCTACCAAAATATCCACCTAGCAAGGAAATGGATGTAAAAGTTCAAGAAGATTCATCCAGGAAAAAGATTGAAGGTAAAATAAGAGAGGTTGCAACATCAAGAAGGCAACAAAGACGAGTCAATAAAATTTTGCATGATCCAAACACTTTTGGTAAATCAACTTCAAAAGAGAATATGCAAAAAAATTCTCAAAATGGTCACAGAGATGATGGTAAAACACATCTTACAAAGGGAAAAGGAGGAGCCATGTACAAAGAGCACACAAAGCCTGCATTGGATGCCATGTCTGAGACTTCCCAAATGATGAATGTTGTTAATGGTAATGGCTACAGTGTGCCAATACAAGTCTCAGGATCTAATGATGCATATACATGGGTAAAAAGAAGAAAACAAGATGCATCATCAACTCTTTCAGATGGCTCAAGAAGCAAAATTAGTGCACTAGATCCAAACTTTGCTAAAGGAACATATGATTTAACTAACCAAAGGGTGTCAATGGATTTTGATCCTGCTGAATTGGTGAATGCTCAGGTAAACATTATCCTCAAGTTCCTCAAGTGA 1773 0.3841 MGCISSKNVVAKTYSPSPSMVEISEVIHTSTKGHSGLTILDSKLNLDNERNNKFKKNSSKKSNGSFGFRLGLAQRNVEVEQNAAGWPPWLTAVAAEAIQGWIPLKADSFQKLEKIGQGTYSSVFRAREVETGKMFALKKVRFDNFQPESIRFMAREITILRRLDHPNIMKLEGIITSRLSNSIYLVFEYMEHDLAGLVSNPDIVFTESQIKCYMRQLLSGLEHCHMRGIMHRDIKVSNILLNNEGVLKIGDFGLANTISTNNKHHLTSRVVTLWYRPPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHKIFKLCGSPPEEFWKKSKLPHATMFKPQTNYESSLRERCADFPTSAINLLETLLSIDSSNRGTSSSALMSEYFNSKPYACNPSNLPKYPPSKEMDVKVQEDSSRKKIEGKIREVATSRRQQRRVNKILHDPNTFGKSTSKENMQKNSQNGHRDDGKTHLTKGKGGAMYKEHTKPALDAMSETSQMMNVVNGNGYSVPIQVSGSNDAYTWVKRRKQDASSTLSDGSRSKISALDPNFAKGTYDLTNQRVSMDFDPAELVNAQVNIILKFLK* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01338 590 FunFam probable serine/threonine-protein kinase At1g54610 96 191 - -
Lapu4g01338 590 Gene3D Phosphorylase Kinase; domain 1 96 191 - -
Lapu4g01338 590 ProSitePatterns Protein kinases ATP-binding region signature. 115 138 IPR017441 GO:0005524
Lapu4g01338 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Lapu4g01338 590 Pfam Protein kinase domain 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01338 590 SUPERFAMILY Protein kinase-like (PK-like) 103 398 IPR011009 -
Lapu4g01338 590 PANTHER CELL DIVISION PROTEIN KINASE 107 397 - -
Lapu4g01338 590 FunFam probable serine/threonine-protein kinase At1g54610 192 432 - -
Lapu4g01338 590 CDD STKc_CDK9_like 109 393 - -
Lapu4g01338 590 MobiDBLite consensus disorder prediction 466 485 - -
Lapu4g01338 590 ProSiteProfiles Protein kinase domain profile. 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01338 590 MobiDBLite consensus disorder prediction 451 465 - -
Lapu4g01338 590 MobiDBLite consensus disorder prediction 450 485 - -
Lapu4g01338 590 SMART serkin_6 109 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01338 590 MobiDBLite consensus disorder prediction 407 426 - -
Lapu4g01338 590 Gene3D Transferase(Phosphotransferase) domain 1 192 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01338 Lapu-Chr4 30231542 30235394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01338 101 433 Core Cell Cycle Gene Families AT5G10270 46.991 1.67e-108 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lapu4g01338 Pkinase 6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01338 - - gmx:100790917 977.237