Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01330 ATGGCTGCGACAAAACCCCAACGCACTCCTCAGGAAGTGGAGGACATTATCATCCGCAAAATCTTCCTCGTCTCCATAACCGAAATCGCCAACACAAGCGCAACAGATTCAAGGATTGTGTATTTGGAACTAACCGCTGCGGAGATTCTCAGCGAAGGGAAGGAGCTTCGCCTCTCGCGGGATTCAATGGAGAGGGTTTTGATCGACCGTCTCTCCGGAGACTTTTCCTCCTCCACCGGAGAAGCCAGCGAGTCGCCGTTCCAGTACCTCGTCGGATGCTACCACCGCGCGCACGAGGAGGGGAAGAAAATTGCGAACATGAAAGACAAGAGCTTGCGCTCGGAGATGGAGGCGGTGGTGAGGCAGGCCAAGAAGCTCTGTGTCAACTACTGCCGGATTCATTTGGCCAATCCCGAGCTCTTTCCAAGCCGGAATTCGGTGGGTTCCGACGCCAATTCGCCGCTGCTGCCGCTGATTTTTGCGGAGGTAGGTGGCGGAAACGTGTTCGGGGGCGGCGGTGGAGGGGTCAAGAGTCCGCCGGGGTTTCTGGAGGAGTTTTTCAGGGACCCGGATTTTGACAGCTTGGACCTGATTTTGAAGGGGTTGTATGAGGAATTGAGAGGGAGCGTGATGAATGTGTCTGCTCTGGGGAATTTTCAGGATTCTCTGAGGGCTTTGTTGTATTTGGTTAGGTTTCCCGTTGGTGCCAAGTCGCTTGTTAATCACGAGTGGTGGATTCCCAAAGGGGTTTATGTGAATGGCCGTGCTATTGAAATGACCAGCATTTTGGGTCCCTTTTTCCATATTAGTGCTCTTCCTGATCAGGCGTTTTTCAAGGGCCAGCCTGATGTTGGGCAGCAGTGTTTTTCTGATGCATCAACTAGGCGACCGGCTGATTTGTTATCTTCATTTTCCACTATCAAAACTGTCATGAACAACTTATATGATGGCCTAGCTGAAGTACTCCTCATCCTTCTTAAGAGTACAACAGACACTCGTGAAAGTGTGCTTGAGTATCTTGCGGAGGTGATCAATATAAATGCATCCAGGGCTCATATACAGGTTGACCCTATTACTTGTGCAAGTTCAGGCACCTTTGTAAATCTCAGCGCTGTCATGCTTCGTCTATGCGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAAATATGTACACTACTCAAATCGCTTGAAGCTAAGTGGGTTGACTGCTCTTCATGCATCATCTGAAGAAGTTGCTGAATGGCTTAATAGTAAAAACCCAGCCAAGACTGGGGCAACCAATCAATATAATGATGACCAGAAACGCCTACAACAATCCCAAGAGGCCAGTAGTTCCGGCAGTAATAATGCTGGTGAGCTCTCAAATGAAAATTCTGCAAGAGCTGAAAAGACGAAATATTCATTTATTTGCGAATGCTTCTTTATGACCGCAAGAGTGCTCAACTTAGGCCTTTTAAAAGCATTTTCTGACTTCAAACATTTAGTTCAGGATATTTCTAGGTGTGAAGATGCTCTCTCCACACTTAAAGCCATGCAGGAGCGGTCACCCACTCCTCAGGTAGAATTAGATATAAATCGACTGGAGAAAGAAATGGAGTTGTATTCACAGGAAAAACTATGTTATGAAGCTCAGATATTGAGGGATAACACACTTATTCAAAATGCACTTTCCTTCTACCGCTTGATGATTGTTTGGTTGGTTGGCATGGTGGGTGGTTTCAAGATGCCTCTACCACCAACTTGCCCAATGGAATTTGCTACCATGCCTGAACATTTTGTGGAAGATGCCATGGAACTTTTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGATGAATTTATGAACTTTATAATTATGTTCATGGCCAGCCCTGAATTTATCAAAAATCCATACCTAAGAGCAAAGATGGTTGAAGTCCTGAACTGCTGGATGCCTCGTAGGAGTGGCTCATCTGCAACAGCCACTTTATTTGAAGGCCACCAACTTTCTCTTGAGTATCTTGTGAGGAATCTTCTTAAACTTTATGTGGACATTGAGTTCACTGGTTCTCACACACAGTTCTACGACAAGTTTAACATCCGCCATAATATTGCGGAACTCCTCGAATACCTGTGGCAAGTCCCCAGTCATCGGAATGCTTGGAGACAGATTGCTAAGGAGGAGGAGAAGGGTGTCTATCTGAATTTCTTGAACTTTCTGATCAATGATAGTATTTATCTTCTAGATGAAAGTCTGAAAAAAATTCTTGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACGGTTGAGTGGGAGCAACGACCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCATTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCAAACGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTACTTCCTGAGATGGTTGAAAGAGTGGCTAGCATGCTCAATTATTTCCTGCTGCAATTGGTGGGTCCCCAAAGAAAATCGCTTAGTCTGAAGGATCCTGAGAAATATGAATTTCGTCCAAAGCATTTGCTAAAACAGATTGTGCACATATATGTTCATCTGGCTAGGGGTGACACGAATTCCATCTTCCCATCTGTCATCTCAAGGGATGGTCGATCATACAATGATCAGTTGTTTAGTGCTGCAGCTGATGTCCTTCACAGAATTGGTGAGGACGGGAGAATTATACAGGAATTTATTCAACTTGGTGCTAAAGCTAAAGTTGCTGCTTCGGAGGCCATGGATGCTGAAGCTACTCTAGGGGAAATACCAGAAGAATTCCTTGATCCAATTCAATATACTCTGATGAAGGATCCAGTTATTTTGCCTTCTTCAAGGACCACGGTTGATCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAGTACTGACCCGTTCAACCGTTCTCATCTTACCGTGGACATGTTGATCCCCAATGATGAGCTAAAAGCAAGAATTGAGGAGTTTGTGAGGTCTCAAGAAATGAAAAAACACGGTGAAGGACTAAGCCTACAGAGTAACAAGGACACAATTCAGACTACAAATGGGGAAATGTTGATTGATTAG 3132 0.4473 MAATKPQRTPQEVEDIIIRKIFLVSITEIANTSATDSRIVYLELTAAEILSEGKELRLSRDSMERVLIDRLSGDFSSSTGEASESPFQYLVGCYHRAHEEGKKIANMKDKSLRSEMEAVVRQAKKLCVNYCRIHLANPELFPSRNSVGSDANSPLLPLIFAEVGGGNVFGGGGGGVKSPPGFLEEFFRDPDFDSLDLILKGLYEELRGSVMNVSALGNFQDSLRALLYLVRFPVGAKSLVNHEWWIPKGVYVNGRAIEMTSILGPFFHISALPDQAFFKGQPDVGQQCFSDASTRRPADLLSSFSTIKTVMNNLYDGLAEVLLILLKSTTDTRESVLEYLAEVININASRAHIQVDPITCASSGTFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHYSNRLKLSGLTALHASSEEVAEWLNSKNPAKTGATNQYNDDQKRLQQSQEASSSGSNNAGELSNENSARAEKTKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDALSTLKAMQERSPTPQVELDINRLEKEMELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGMVGGFKMPLPPTCPMEFATMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMASPEFIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLKKILELKELEAEMSNTVEWEQRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNSIFPSVISRDGRSYNDQLFSAAADVLHRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPEEFLDPIQYTLMKDPVILPSSRTTVDRPVIQRHLLSDSTDPFNRSHLTVDMLIPNDELKARIEEFVRSQEMKKHGEGLSLQSNKDTIQTTNGEMLID* 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01330 1043 SMART Ubox_2 948 1011 IPR003613 GO:0004842|GO:0016567
Lapu4g01330 1043 MobiDBLite consensus disorder prediction 428 462 - -
Lapu4g01330 1043 PANTHER UBIQUITINATION FACTOR E4 4 1020 IPR045132 GO:0000151|GO:0030433|GO:0034450
Lapu4g01330 1043 CDD RING-Ubox_UBE4A 947 1015 - -
Lapu4g01330 1043 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 944 1022 IPR013083 -
Lapu4g01330 1043 Pfam Ubiquitin elongating factor core 263 928 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Lapu4g01330 1043 Pfam U-box domain 945 1016 IPR003613 GO:0004842|GO:0016567
Lapu4g01330 1043 ProSiteProfiles U-box domain profile. 944 1018 IPR003613 GO:0004842|GO:0016567
Lapu4g01330 1043 SUPERFAMILY RING/U-box 937 1017 - -
Lapu4g01330 1043 Coils Coil 523 550 - -
Lapu4g01330 1043 FunFam Ubiquitin conjugation factor e4 a 944 1022 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01330 1 1043 U-box Gene Family AT5G15400 75.427 0.0 1618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01330 K10597 - gmx:100806175 1876.68