Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01326 ATGGCGGAACCATCCACCACCTCCGCCACCGACCCTCCGCCGCCGGTTACCAAAAGATGGGCTGACGAAGCGGATGAAGAAGCCGAAGCCTCCTCCACCGCCACCGCCACCGCCACCGCCACCGAAACCTCTTCCGTCAACCTCGACGCGTTAAAAATCGAAGACAAAGACGAGAGTCCTCCCAAGCTGTTAGACGACCCCGATGATTCTAACATCCAAGCAGTTACCTCTGGAGAAACGCCGTACACGTCGGCCGCGACGTTCGAGGACCTGAACCTCTCGCCGGAGCTTCTGAAGGGGCTCTACGTGGAGATGAAGTTCCAGAAGCCGAGCAAGATCCAGGCGATAAGTTTACCGATGATCCTGAGCCCGCCGCACCGGGACCTGATTGCGCAGGCGCACAACGGGTCTGGCAAGACCACGTGCTTCGTGCTCGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCGCCGCAGGCTCTTTGTGTCTGCCCCACCCGGGAGTTGGCTAATCAGAACACCGAGGTTCTCCGTAAGATGGGGAAGTACACCGGTATTGCGTCGGAGTGCGCGGTGCCGACGGATAACACTGCGCCCTCGATTGCGAAAAGGGCGCCAATTATGGCACAGGTGGTGATTGGGACCCCTGGCACCATCAAAAAGTGGATGAGCTTCAAGAAGCTTGGGGCCGCCAGGCTGAAGATTCTCGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATAGAAAAAGTCAATTCTAATTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACGGTCAAGAATTTCGTTTCAAGGACAGTCAAGGCAGATCATAATAAACTTTTTGTAAAGAAGGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTATACTGTCCTGATGAACTTGCTAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTAGGTCAAACCATTATATTTGTGCGTACAAGAAATAGTGCACAAGTGTTGCATAAATCACTTGTTGACTTGGGCTATGAGGTTACGTCTATACAAGGTGCTCTTGGTTATGAAGAGAGAGAAAAAATTGTTAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATTTCAACTGATCTTCTTGCTCGAGGCTTTGATCAGCAACAGGTTAATCTGGTCATCAATTATGATCTTCCAATGAAACACACTGCCAGCTATACCCGTGAACCTGAGCCTGATTGTGAAGTGTATTTGCATAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAGGGGGCTGTATTTAACCTGATATGTGATGAAAAGGATGAAAGGCTCATGTCGAAGATTGAGAATCATTTTGGCACTCGTGTAGCTGAGGTGCGAGCACAAAGTGTTGAAGACTATAAAGCTGCTCTCAAGGAAGCCGGTTTACTGCAATGA 1485 0.4882 MAEPSTTSATDPPPPVTKRWADEADEEAEASSTATATATATETSSVNLDALKIEDKDESPPKLLDDPDDSNIQAVTSGETPYTSAATFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILSPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELANQNTEVLRKMGKYTGIASECAVPTDNTAPSIAKRAPIMAQVVIGTPGTIKKWMSFKKLGAARLKILVFDEADQMLAEDGFKDDSLRIMKEIEKVNSNCQVLLFSATFNDTVKNFVSRTVKADHNKLFVKKEELSLDAVKQYKVYCPDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQVLHKSLVDLGYEVTSIQGALGYEEREKIVKEFRDGLTQVLISTDLLARGFDQQQVNLVINYDLPMKHTASYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDEKDERLMSKIENHFGTRVAEVRAQSVEDYKAALKEAGLLQ* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01326 494 MobiDBLite consensus disorder prediction 49 65 - -
Lapu4g01326 494 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 295 IPR014001 -
Lapu4g01326 494 SMART helicmild6 350 443 IPR001650 -
Lapu4g01326 494 Gene3D - 65 302 IPR027417 -
Lapu4g01326 494 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 461 IPR027417 -
Lapu4g01326 494 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 115 IPR014014 GO:0003724
Lapu4g01326 494 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 484 IPR001650 -
Lapu4g01326 494 MobiDBLite consensus disorder prediction 1 76 - -
Lapu4g01326 494 SMART ultradead3 106 311 IPR014001 -
Lapu4g01326 494 MobiDBLite consensus disorder prediction 30 48 - -
Lapu4g01326 494 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 463 - -
Lapu4g01326 494 Pfam DEAD/DEAH box helicase 112 283 IPR011545 GO:0003676|GO:0005524
Lapu4g01326 494 CDD SF2_C_DEAD 308 452 - -
Lapu4g01326 494 Pfam Helicase conserved C-terminal domain 321 443 IPR001650 -
Lapu4g01326 494 Gene3D - 305 487 IPR027417 -
Lapu4g01326 494 CDD DEADc_DDX19_DDX25 93 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01326 Lapu-Chr4 30133446 30138322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01326 79 475 Eukaryotic Initiation Factors Gene Family AT1G72730 36.520 1.55e-70 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01326 K18655 - gmx:100784739 761.911