Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01315 ATGGCAACAGCGAGGACCGTTAAGGATGTTTCGCCTCACGATTTCGTTAAGGCTTACTCTTCCCACCTCAAGCGTTCCGGCAAGATGGAGCTTCCTGAGTGGACTGATATTGTAAAAACAGCAAAATTTAAGGAACTGGCTCCATATGATCCTGACTGGTATTATGTTAGAGCTGCCTCAATGGCAAGGAAGATCTATTTGAGAGGTGGTCTTGGTGTTGGCGCTTTCCAGAGGATCTATGGTGGAAGCAAGAGGAATGGAAGCCGCCCTCCACATTTCTGCAAGAGCAGTGGTGCTATCGCCAGACACATTCTGCAACAGTTGGAACACATGAACATTGTTGAGATTGATACTAAAGGAGGTAGGAAAATCACTTCTAGTGGTCGAAGGGATCTTGACCAAGTTGCTGGGCGAATTGTGGTTGCTGCTTGA 432 0.4699 MATARTVKDVSPHDFVKAYSSHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLEHMNIVEIDTKGGRKITSSGRRDLDQVAGRIVVAA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01315 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Lapu4g01315 143 FunFam 40S ribosomal protein S19 2 143 - -
Lapu4g01315 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lapu4g01315 143 Gene3D - 1 142 IPR036388 -
Lapu4g01315 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Lapu4g01315 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 141 IPR036390 -
Lapu4g01315 143 PANTHER 40S RIBOSOMAL PROTEIN S19 2 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01315 Lapu-Chr4 30045694 30047838 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01315 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 88.652 8.74e-95 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01315 K02966 - gmx:100805469 284.648