Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01300 ATGTTTTCTTCTTCTCATTGTGGTTCAGTGATCAAATGGAATTCCCTCGTGCAGTTTCTCTTCCTCGTTTTCTTGGTTCTCTTCTCGTCGCGAAGCGACGCCGTCTCCACCGATTCGGACGAATTCGCACTCCTCCGCCTGAAGGCATCGTTCTCCGACCCCGCCGGCGTTCTCTCCTCGTGGACCTCCGTACCTGGCGCTGACTCTGGCTACTGCTCCTGGTCTGGTGTTCTGTGCAACGCGAACTCCCGGGTGGTCGCCGTCAACGTCACCGGAAACGGCGGAAAAGGCGGAAACCGAACCTCTCACCCGTGCTCTGGTTTCTCTCAATTCCCCCTTTACGGATTCGGAGTTCGACGAACATGCGAAGGTAGTAAAGGTTCTCTTTTTGGAAATGTTTCTTCTTTTAATTTCATCAGCGAGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGTGAAATCCCCAAAGCGATTTGGGGCATGGAAAAGCTAGAGGTTCTCGATTTAGAAGGGAATTTGATAAGTGGCTACCTTCCCTTGAGAATTAACGGCTTGAGGAAGTTCAGGGTTCTGAATCTTGGGTTTAATAGGATTGTAGGGGAGATTCCTAGTTCAATTTCGTCTCTTGAGAATTTGGAGGTTTTAAATTTGTCTGGTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGCTTAGAGGTGTGTATCTTTCGTTTAACCAGCTCAGTGGGGTTATTCCGCAAGAGATTGGGGAGAATTGTTGGAAGCTTGAGCATTTGGATTTGTCTGCGAATGCGTTGGTTGAAGGAATTCCAGTGAGTTTGGGGAATTGTGGTAGGTTAAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGAGTATTCCTGGTGAGCTTGGGATGCTTAAGAACCTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGCCCTGTGCCGAGGGAGCTTGGGAATTGCTCAGAGTTGTCGGTTCTTGTGCTGTCAAATCTCTTTGATGTGCGCGGGGATGCTGCCGGTGATTTTGGGAAATTAGGTTCAGTGAATGATCAGGTGAATTATTTTGAAGGGTCAATGCCAGTGGAGGTTTTTACGCTTCCGAAGTTGAGAATATTGTGGGCTCCCATGGTGAATTTGGAAGGCAGTTTTCAGGTAAGTTGGGGTGGTTGTCAGAGCTTGGAGATGGTCAATTTGGCTCAGAATTTTTTCAGTGGGGAGTTTCCGAACCAGCTTGGTGTCTGCGAGAGACTGCATTTTCTTGATTTAAGCGGAAACAACCTTACTGGGGTTCTTTTTGACGAACTTAGCGTTCCCTGTATGAGTGTGTTTGATGTTAGTGGGAACATGTTATCTGGTTCAATTCCTAATTTCTCCGATACTGTTTGTCCCCCTGAACCTTCTTGGAATGGAGACCTGTTTGGAGGTGGTAATGTTTCCCCACCCTATGCATCCTTTTTTTCATCAAAGGTTCGGGAGAATTCACTTTTCACAGCAATAGGGGGAGTTGGTCTTTCAATTGTTCACAACTTTGGCCAAAACAACTTTAATGGCATTCTCTCCTTACCTATGGCACGCAACAGGCTGGGGAAACAGAACAGTTACACATTTCTGGTTGGTGAAAATAATCTTACTGAACCATTTCCTACATATTTATTTGAGAAATGCCATGGAGTAGATGCATTGCTTCTAAATGTCAGTTATAATAGGATATCTGGTCACATTCCTTCCAGTTTCAGTGAGATATGCAGATCATTGAAATTTTTGGACGTGTCTGGAAATCAGCTTGCAGGACCGATTCCCGTTGATTTAGGGAATATGGTCTCCCTTGCATCGCTGAACCTCAGTAGGAATCAGTTGCAAGGTCAGATTCCCACCAGCCTTGGCCAGATAAAGAATCTAAAGTTTCTTTCTTTGGCTGGTAATAAGTTAAATGGCTCAATTCCGACCAGCCTGGGGCAGTTGTACTCTTTGGAGATCTTGGACCTTTCTTCAAACTATCTTACTGGTGAGATTCCAAAGGCTATTGAAAACATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCACATTCCTGATGGTTTGGCTTATGTCACTACGCTCTCAGCATTCAATGTGTCTTTCAACAACTTATCCGGATCGTTGCCTTCAAATAGTGGCTTGATTAAATGCAGCAGTGCTGTTGGGAATCCGTATCTAAGCCCCTGCCGTGGAGTTTCTCTATCTGTGCCATCAGGGAGTCAACTAGGGCCGATCGATGGCAACTCTTATAATTCAGCAGCAGAACAAGCTAGTGGGAAGGAGAGTGGGAATGGCTTGAGTTCCATTGAAATAGCATCTATTACTTCTGCTTCAGCCATTGTTTCAGTTCTTATAGCCCTGATTGTTCTATTCTTTTACACTCGGAAATGGAAGCCTAGGTCCAGGGTTGTTGGTTCTACAAGAAAAGAAGTTACAGTGTTTACTGATATTGGGGTCCCATTGACGTTTGAAACTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATTGGGAGTGGAGGTTTTGGGGCAACATATAAGGCAGAGGTATCACCAGGAATCTTGGTGGCAGTCAAACGACTTGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCTGAAACCAAGACCCTTGGGAGGCTTCATCATCCTAATCTTGTCACTCTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCTGGTGGGAATCTTGAAAAGTTCATCCAAGAGAGGTCGACAAGGGTTGTGGATTGGAGAATTCTTCACAAGATTGCATTGGACATAGCTCGAGCACTTGCCTATCTGCATGATCAGTGTGTTCCCCGTGTTCTTCACCGTGATGTCAAGCCCAGCAACATCTTGTTAGATGACGATTTCAATGCATATCTATCGGACTTCGGATTGGCTAGACTTCTGGGAACCTCAGAGACACATGCTACGACTGGTGTAGCCGGAACATTTGGGTATGTTGCTCCTGAGTATGCAATGACTTGCCGTGTGTCTGATAAGGCTGATGTGTATAGCTATGGTGTGGTGCTTCTGGAGTTGCTCTCAGACAAGAAGGCATTGGATCCTTCATTTTCTTCTTTTGGAAATGGGTTCAACATAGTGGCATGGGCATGCATGCTGCTGAAGCAAGGAAGGGCAAATGAGTTCTTCACTGCAGGGTTATGGGAAGCAGGACCTGGAGAGGATTTGGTAGAGGTCCTTCACTTGGCAATTGTGTGTACTGTTGATTCTCTCTCTACCAGACCAACAATGAAACAAGTTGTCAGAAGGCTTAAGCAACTTGAACCCCCATCATGCTAG 3408 0.4545 MFSSSHCGSVIKWNSLVQFLFLVFLVLFSSRSDAVSTDSDEFALLRLKASFSDPAGVLSSWTSVPGADSGYCSWSGVLCNANSRVVAVNVTGNGGKGGNRTSHPCSGFSQFPLYGFGVRRTCEGSKGSLFGNVSSFNFISELTELRVLSLPFNALEGEIPKAIWGMEKLEVLDLEGNLISGYLPLRINGLRKFRVLNLGFNRIVGEIPSSISSLENLEVLNLSGNELNGSVPGFVGRLRGVYLSFNQLSGVIPQEIGENCWKLEHLDLSANALVEGIPVSLGNCGRLRTLLLYSNLLEESIPGELGMLKNLEVLDVSRNTLSGPVPRELGNCSELSVLVLSNLFDVRGDAAGDFGKLGSVNDQVNYFEGSMPVEVFTLPKLRILWAPMVNLEGSFQVSWGGCQSLEMVNLAQNFFSGEFPNQLGVCERLHFLDLSGNNLTGVLFDELSVPCMSVFDVSGNMLSGSIPNFSDTVCPPEPSWNGDLFGGGNVSPPYASFFSSKVRENSLFTAIGGVGLSIVHNFGQNNFNGILSLPMARNRLGKQNSYTFLVGENNLTEPFPTYLFEKCHGVDALLLNVSYNRISGHIPSSFSEICRSLKFLDVSGNQLAGPIPVDLGNMVSLASLNLSRNQLQGQIPTSLGQIKNLKFLSLAGNKLNGSIPTSLGQLYSLEILDLSSNYLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAYVTTLSAFNVSFNNLSGSLPSNSGLIKCSSAVGNPYLSPCRGVSLSVPSGSQLGPIDGNSYNSAAEQASGKESGNGLSSIEIASITSASAIVSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFETVVQATGNFNAGNCIGSGGFGATYKAEVSPGILVAVKRLAVGRFQGVQQFHAETKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERSTRVVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSFGNGFNIVAWACMLLKQGRANEFFTAGLWEAGPGEDLVEVLHLAIVCTVDSLSTRPTMKQVVRRLKQLEPPSC* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01300 1135 Pfam Leucine Rich Repeat 668 690 IPR001611 GO:0005515
Lapu4g01300 1135 Pfam Protein kinase domain 859 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01300 1135 SUPERFAMILY L domain-like 37 343 - -
Lapu4g01300 1135 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 358 533 - -
Lapu4g01300 1135 SUPERFAMILY L domain-like 573 734 - -
Lapu4g01300 1135 SMART LRR_typ_2 166 190 IPR003591 -
Lapu4g01300 1135 SMART LRR_typ_2 618 642 IPR003591 -
Lapu4g01300 1135 SMART LRR_typ_2 308 332 IPR003591 -
Lapu4g01300 1135 SMART LRR_typ_2 214 236 IPR003591 -
Lapu4g01300 1135 SMART LRR_typ_2 690 714 IPR003591 -
Lapu4g01300 1135 SMART LRR_typ_2 666 689 IPR003591 -
Lapu4g01300 1135 SMART LRR_typ_2 262 284 IPR003591 -
Lapu4g01300 1135 SUPERFAMILY Protein kinase-like (PK-like) 838 1127 IPR011009 -
Lapu4g01300 1135 Gene3D Ribonuclease Inhibitor 36 239 IPR032675 -
Lapu4g01300 1135 Gene3D Ribonuclease Inhibitor 505 759 IPR032675 -
Lapu4g01300 1135 Gene3D Ribonuclease Inhibitor 349 475 IPR032675 -
Lapu4g01300 1135 Gene3D Ribonuclease Inhibitor 240 344 IPR032675 -
Lapu4g01300 1135 ProSiteProfiles Protein kinase domain profile. 856 1130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01300 1135 CDD STKc_IRAK 862 1130 - -
Lapu4g01300 1135 Gene3D Transferase(Phosphotransferase) domain 1 932 1131 - -
Lapu4g01300 1135 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 820 931 - -
Lapu4g01300 1135 SUPERFAMILY L domain-like 302 467 - -
Lapu4g01300 1135 PRINTS Leucine-rich repeat signature 429 442 - -
Lapu4g01300 1135 PRINTS Leucine-rich repeat signature 666 679 - -
Lapu4g01300 1135 Pfam Leucine rich repeat N-terminal domain 38 80 IPR013210 -
Lapu4g01300 1135 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 280 1129 - -
Lapu4g01300 1135 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 932 1134 - -
Lapu4g01300 1135 FunFam Leucine-rich repeat receptor protein kinase EMS1 664 744 - -
Lapu4g01300 1135 ProSitePatterns Serine/Threonine protein kinases active-site signature. 976 988 IPR008271 GO:0004672|GO:0006468
Lapu4g01300 1135 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 253 344 - -
Lapu4g01300 1135 SMART serkin_6 856 1130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01300 1135 Gene3D Phosphorylase Kinase; domain 1 819 931 - -
Lapu4g01300 1135 ProSitePatterns Protein kinases ATP-binding region signature. 862 884 IPR017441 GO:0005524
Lapu4g01300 1135 FunFam LRR receptor-like serine/threonine-protein kinase 592 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01300 Lapu-Chr4 29917737 29921727 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01300 34 1135 Receptor kinase-like Gene Family AT3G02130 63.345 0.0 1320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Lapu4g01300 Pkinase 6.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01300 - - vum:124828178 1891.7