Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01297 ATGATCAATAGTACAAAAGAAGCAGATTTTCAACTAAAACAGGAAGGTCTTTCTTCAAGTGATCATGAAAAAGCAAAGGCTTCAATGAGCTCATCCTCCCAATGGCTGAAATTGAAGGATCCGAGGATTGTTCGTGTGTCTCGAGCCTTTGGAGGAAAAGACAGGCACAGCAAGGTGTGCACAGTAAGAGGACTAAGAGATAGGAGGGTGAGGCTTTCAGTCCCAACAGCAATTCATCTCTATGACCTCCAAGATAGGCTTGGACTCAATCAACCTAGCAAGGTTGTTGATTGGTTGCTCAATGCAGCCAAGCATGAAATCGATGAGCTGCCACCACTTCCAATTCCTCCAGGTAACTTCACCCTTGGTTATCCATCTCTTGTTGCTTGTAATGATGTTAGCACCTCTCGTGAAGGTTCAGGCCAAAACAATAACACTTTATGGAAATCAAAGTCAAGAGAAATGGTTAGTGATAAAGCAAATTGGATGAATAGAAGTGAAGAGGATGATAATAATAATACTACTACTAATAGTAATGATGGTGATAATGAACATTGTCGTGGTGCACATGTTTTACCAAATAATCTCTTAGCAAGACCAAACCCTCCTTCTTTTTTGGGCTTGATGAACACCATGCCATCACTTGGTTACCAATGGGAGCCTAATTCAGGTGATGTTGCTCAGTGGACAAACCATGGATTTGTTAATCAAACAGATATACACAGCATTAATGTAGTTCCAATCCCATCTACTTTGGCTCTATCTACTGGGAGTACTACTCCTCAAATTTTGGTGTGTCCTCCTGGAGCAACACAGCCATATTTCCCTTCCCATGTTGCAGCAATGGAGATGAATGCAAGACAGATCAATCACTATCAGATGCTGACTTCAGGTTCTCAAAATCTCTCGGCAAATTCTCTCAATCCATCACAACAACTCATGACCCAATATGGGAAAGTTCCATTCAGCTTGGTTAGGCCTAAACTTTTCCATTCTCCTAACAGCAGTGAAAGCCATCCCCGTAAAGACCAGGATTTTCCTTCCAAGTGA 1050 0.4181 MINSTKEADFQLKQEGLSSSDHEKAKASMSSSSQWLKLKDPRIVRVSRAFGGKDRHSKVCTVRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTLGYPSLVACNDVSTSREGSGQNNNTLWKSKSREMVSDKANWMNRSEEDDNNNTTTNSNDGDNEHCRGAHVLPNNLLARPNPPSFLGLMNTMPSLGYQWEPNSGDVAQWTNHGFVNQTDIHSINVVPIPSTLALSTGSTTPQILVCPPGATQPYFPSHVAAMEMNARQINHYQMLTSGSQNLSANSLNPSQQLMTQYGKVPFSLVRPKLFHSPNSSESHPRKDQDFPSK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01297 349 MobiDBLite consensus disorder prediction 335 349 - -
Lapu4g01297 349 MobiDBLite consensus disorder prediction 152 166 - -
Lapu4g01297 349 Pfam TCP family transcription factor 52 178 IPR017887 -
Lapu4g01297 349 ProSiteProfiles TCP domain profile. 52 110 IPR017887 -
Lapu4g01297 349 MobiDBLite consensus disorder prediction 1 15 - -
Lapu4g01297 349 MobiDBLite consensus disorder prediction 1 33 - -
Lapu4g01297 349 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 286 IPR005333 GO:0003700
Lapu4g01297 349 MobiDBLite consensus disorder prediction 134 188 - -
Lapu4g01297 349 MobiDBLite consensus disorder prediction 134 151 - -
Lapu4g01297 349 MobiDBLite consensus disorder prediction 167 182 - -
Lapu4g01297 349 MobiDBLite consensus disorder prediction 328 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01297 Lapu-Chr4 29878852 29881722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01297 35 122 TCP Transcription Factor Family AT3G02150 84.091 8.08e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lapu4g01297 TCP 2.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01297 - - aprc:113867214 520.776