Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01288 ATGCACACTTACGGAAGTAATAGGGATACCAGGTACAGCGACGCTTTCCTGAACGGCCTCGAGATCTTCAAAATCAGCGAGGCCGGCTCAAACAACCTCGCCGGACCCAACCCGGACCCGGTTCAGACTAACAGCATACCGGGCCAAAACGGAAAGAGAAGCGGCGGAAGTGGAACAGCAAGAATCGGCGTCGTAGCGGGGGTGGTGTCCGGGGTCGTTTTGATCTCGCTAATCGTTTTGCTTGTCGTGTTTTTCCGACGCAAGAGAACCACAAACCCAAAAGATTACAACAAGTCAAAGTCTTCCGTGACTTCCAAGTGGGGTCCACTCTCCTTCACAACGACCAAGTCAACCACCACAAACTCCTCCCTACCGTCCGATCTCTGCCGCCACTTCTCCCTAGCAGAGATCAAAGCCGCAACCAACAACTTCGACGACGTCTTCATCGTCGGCGTCGGGGGATTCGGTCATGTGTACAAGGGCAACATCGATGGGGGCTCAACCCCGGTCGCCATCAAGCGCCTCAAACCGGGTTCGCAGCAGGGTGCACACGAGTTCATGAACGAGATCGAGATGCTCTCAAAGCTCCGCCACCTCCATCTCGTGTCCCTAATCGGATACTGCAACGAGATGAACGAGATGATCCTGGTCTACGACTTCATGGCGCGTGGCACCCTACGCGACCATCTCTACAACACGGACAACCCCGCTATCTCGTGGAAGCAGCGCTTGCAGATCAGCATCGGCGCGGCGCGTGGACTGCACTATCTCCACACAGGCGCGAAGCACACGATCATCCACCGGGACGTGAAAACCACGAACATCTTGTTGGATGATAAGTGGGTGGCCAAGGTTTCGGACTTCGGGCTCTCCAGAATTGGGCCCACGGGAATGTCGAAGGCCCATGTCAGCACAGTGGTAAAGGGCAGCATTGGGTATTTAGACCCAGAGTATTACAAACGACAGCGTCTGACGGAAAAGTCTGACGTGTACTCTTTCGGTGTGGTGTTGTTTGAGTTACTCTGCGCTCGTCCGCCTCTGATCCGCACAGCAGAGAAGAAACAGGTTTCACTCGCAGATTGGGCGAGACACTGTTATCAGAATGGGAGCATTGCGCAGATTATAGACCCCGCATTGAAGGGAAGGATCGCGCCGGAGTGCTTGAGGAAGTTCTGCGAGATCGGAGTGAGTTGTTTGTTGGACGACGGAACACAGCGGCCATCGATGAACGACATCGTTTGGATGCTGGAGTTTGCGTTGCAGTTACAAGAGAGTGCGGAACAGCGCGAAAATGCGAATGTGATTTCTGGTGAGGGGGTTAACGAAAGAAGAGAGGAAGGTAATGACGATTTGTTTAGCAGTGGCACCAGTGTGGGCCAAGTTTCAGATTTTAACAAGAGTAGTGGAACTAGTGTGGTGAGTGTGAGTACGAGTAGTGAAGAGCTTGGTAGTAGCTATAAGGAGAGTGACAAATTAATGTCTGGAACTGTTTTCTCTGAAATAGTTGACCCAAAGCCTCGTTGA 1524 0.5282 MHTYGSNRDTRYSDAFLNGLEIFKISEAGSNNLAGPNPDPVQTNSIPGQNGKRSGGSGTARIGVVAGVVSGVVLISLIVLLVVFFRRKRTTNPKDYNKSKSSVTSKWGPLSFTTTKSTTTNSSLPSDLCRHFSLAEIKAATNNFDDVFIVGVGGFGHVYKGNIDGGSTPVAIKRLKPGSQQGAHEFMNEIEMLSKLRHLHLVSLIGYCNEMNEMILVYDFMARGTLRDHLYNTDNPAISWKQRLQISIGAARGLHYLHTGAKHTIIHRDVKTTNILLDDKWVAKVSDFGLSRIGPTGMSKAHVSTVVKGSIGYLDPEYYKRQRLTEKSDVYSFGVVLFELLCARPPLIRTAEKKQVSLADWARHCYQNGSIAQIIDPALKGRIAPECLRKFCEIGVSCLLDDGTQRPSMNDIVWMLEFALQLQESAEQRENANVISGEGVNERREEGNDDLFSSGTSVGQVSDFNKSSGTSVVSVSTSSEELGSSYKESDKLMSGTVFSEIVDPKPR* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01288 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Lapu4g01288 507 FunFam Receptor-like protein kinase FERONIA 221 437 - -
Lapu4g01288 507 MobiDBLite consensus disorder prediction 31 57 - -
Lapu4g01288 507 ProSiteProfiles Protein kinase domain profile. 144 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01288 507 Gene3D Phosphorylase Kinase; domain 1 108 220 - -
Lapu4g01288 507 CDD STKc_IRAK 150 417 - -
Lapu4g01288 507 SUPERFAMILY Protein kinase-like (PK-like) 119 419 IPR011009 -
Lapu4g01288 507 Gene3D Transferase(Phosphotransferase) domain 1 221 443 - -
Lapu4g01288 507 MobiDBLite consensus disorder prediction 463 487 - -
Lapu4g01288 507 FunFam Receptor-like protein kinase FERONIA 116 220 - -
Lapu4g01288 507 PANTHER OS07G0166700 PROTEIN 128 423 IPR045272 GO:0004714|GO:0006468
Lapu4g01288 507 Pfam Protein tyrosine and serine/threonine kinase 150 414 IPR001245 GO:0004672|GO:0006468
Lapu4g01288 507 ProSitePatterns Protein kinases ATP-binding region signature. 150 173 IPR017441 GO:0005524
Lapu4g01288 507 MobiDBLite consensus disorder prediction 31 56 - -
Lapu4g01288 507 MobiDBLite consensus disorder prediction 463 483 - -
Lapu4g01288 507 SMART serkin_6 144 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01288 Lapu-Chr4 29774082 29777369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01288 11 507 Receptor kinase-like Gene Family AT3G51550 56.893 0.0 535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lapu4g01288 PK_Tyr_Ser-Thr 9.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01288 - - gsj:114381619 810.446