Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01282 ATGAGCTTCAAGGGTGTCATCCCCCTACAATTCTTCCTCCTCCACCTTTTTACACTCTTTACTCGCCTCCAAGCCTACACCCCATTCAACAATGTCACAATCAGTTGCGGCGCCACTGGAACAACCTACGACGGTGAAAGAACATGGATAGGAGACACAGGGGTCGTCTTCGTCTTTGTCTCGCTTGTTGGTTTCTTTGCCTTTTGGTTGGTGAGATCCAAGTTCAGTCCACTCTCGTTCTCAACCAAAGAACACGTACTGTCAGCCACCACACGTCTCAGCCGGTGCTTCTCCCTCGCAGAGATCAAAGCCGCCACCAACAACTTCGACGAGACTTCCATCGTCGGCGTCGGAGGATTCGGCCACGTATACAGGGGCTTCATCGGAAGAATTTTCATCCCGTTGACTCTCAAGTACTTGAAATCGGGGTCAAATGGAGGTCAAAAGTTCCTTAACGAGATCGAGGTGGCTATCAAGCGCCTCAAACCGGGTTCAAAGCAGGGCGCTGAAGAGTTTATGAACGAGATCGAGATGCTCTCACAGCTCCACCATCGTAACATCGTTCCACTCATCGGTTACTGCAACAGCAACAAAGAGATGATCTTGGTTTATAATTTCATGGCACGCGGCAACCTCCGAGACCATCTCTACAACAGCGACAAACCTCCTTTGCCATGGAAGCGACGCTTGCAGATTTGTATCGACGCGGCGCACGCGCTGCATTATCTTCACCGCTACGCCAAAGCATACCCGATCATCCACTGCGACGTGAAAACGACGAACATCTTGTTGGATGAGGAATGGGTGGCCAAGGTATCGGACTTTGGACTTTCCAGAATTGGGTTTATGGGCGATTCGAAGGCCCATGTCTGCAACACCACCATGAAGGGTAGCTTTGGCTACATAGACCCAGAGTATTATAAACGGCAGCACTTGACGGAAAAGTCTGATGTGTACTCTTTCGGAGTAGTGCTGTTTGAGGTACTATGCGCTCGTGCGCCTCTGATCCACACCACGGATCCCAGACAAGAGTCTCTTGGTAACTGGGTTAGATACTGTTATCAAAATGGGACCATGGAACAGATATTGGACCCTACGTTGAAGGGAAAGATTGCAACCGAATGCTTTGGAATGTTTTGCAAGATTGGAGTGTGTTGTTTGTCAGAAGTTGGGACGCAGAGACCGTCCATGAACGACGTCGTTGGGAACCTGAAGTATGCGCTGCAGCTACAAGAAAGTGCAGAAATTAACCCAATGTCTAGTTAA 1266 0.4945 MSFKGVIPLQFFLLHLFTLFTRLQAYTPFNNVTISCGATGTTYDGERTWIGDTGVVFVFVSLVGFFAFWLVRSKFSPLSFSTKEHVLSATTRLSRCFSLAEIKAATNNFDETSIVGVGGFGHVYRGFIGRIFIPLTLKYLKSGSNGGQKFLNEIEVAIKRLKPGSKQGAEEFMNEIEMLSQLHHRNIVPLIGYCNSNKEMILVYNFMARGNLRDHLYNSDKPPLPWKRRLQICIDAAHALHYLHRYAKAYPIIHCDVKTTNILLDEEWVAKVSDFGLSRIGFMGDSKAHVCNTTMKGSFGYIDPEYYKRQHLTEKSDVYSFGVVLFEVLCARAPLIHTTDPRQESLGNWVRYCYQNGTMEQILDPTLKGKIATECFGMFCKIGVCCLSEVGTQRPSMNDVVGNLKYALQLQESAEINPMSS* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01282 421 SUPERFAMILY Protein kinase-like (PK-like) 88 404 IPR011009 -
Lapu4g01282 421 Gene3D Phosphorylase Kinase; domain 1 73 206 - -
Lapu4g01282 421 PANTHER OS07G0166700 PROTEIN 95 411 IPR045272 GO:0004714|GO:0006468
Lapu4g01282 421 SMART serkin_6 109 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01282 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Lapu4g01282 421 ProSiteProfiles Protein kinase domain profile. 109 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01282 421 Gene3D Transferase(Phosphotransferase) domain 1 207 418 - -
Lapu4g01282 421 FunFam Receptor-like protein kinase FERONIA 207 421 - -
Lapu4g01282 421 Pfam Protein tyrosine and serine/threonine kinase 114 403 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01282 Lapu-Chr4 29745725 29748118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01282 81 417 Receptor kinase-like Gene Family AT3G51550 57.567 6.60e-122 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lapu4g01282 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01282 - - vun:114180426 569.311