Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01276 ATGACCTTCTTCACTTTCATCTCTTCCTTAACACTACTATTCTTCCTTCTTCTACACTTCTCCATACACCTCCAAGCCTACACCCCAGAGGAAATTTTCACTATCAGTTGCGGCACCACCGGGAATTCCTCTGACGGTCAAAGGACGTGGACCGGCGACACAGACACAAAGCAGAGTTCCTCCCCGCCGACAGATCTCTGCCGTCGCTTCTCCCTCGATGAGATCAGAACGGCCACCCAAAACTTCAACGAACTCTTCATCGTCGGCACAGGGGGATTCGGCCACGTGTACAAGGGCTACATCGACGAGGGTTCCGTCGCCGTGGCCATCAAGCGGCTTAAACAGGATTCGCAGCAGGGGGCTCGCGAGTTCCTGAACGAAATCAAGATGCTCTCGCAACTACGCCACCTCAATCTGGTGTCCCTCATCGGCTACTGCAACGATAACAGGGAAATGATCTTGGTCTATGATTTCATGACACGTGGCAACCTCCGCGACCATCTGTACAATACGGATAACCCCCTTCTCACGTGGAAGCAACGCTTGCAGATTTGCATAGGTGCCGCGCGTGGGTTGCATTATCTGCACACAGGCACGAAGCACATGATCATCCACCGCGACGTGAAAAGCACGAACATCTTGTTGGACGATAACTGGGAAGCGAAGGTTTCAGATTTCGGGCTTTCCAGACTGGGGCCTATCGGAGCTTCGAAGGCCCACGTTAGCACCGATGTGAGGGGCAGCTTCGGGTATTTGGATCCGGAGTATTATAAACGATGCCGTTTGACGGAGAAGTCTGATGTGTACTCTTTGGGGGTTGTGCTCTTTGAGATCCTGTGTGGTCGTCCCCCTTTGCTCCACACTGCGGAGACGCAACAGGTTTCGCTTTCTAATTGGGTGAGACATTGTTACTATAGTGGGACCATAACAGAGATTGTGGATCCTACGTTGAAGAATAAAATTGAGGCAAAGTGCTTGAAGAAGTTCTGTGAGATTGGGATGAGTTGTCTGTCGGAAGATGGAACGAAGAGGCCATTGATGAAGGATGTGATTGGGATGCTTGAATTTACGCTGCAGCTACAGGAAACTGCTCAGCAAGCTGAAAATGTTCCTCTTCTTAATGGAGAAGGAGTGTGA 1137 0.5075 MTFFTFISSLTLLFFLLLHFSIHLQAYTPEEIFTISCGTTGNSSDGQRTWTGDTDTKQSSSPPTDLCRRFSLDEIRTATQNFNELFIVGTGGFGHVYKGYIDEGSVAVAIKRLKQDSQQGAREFLNEIKMLSQLRHLNLVSLIGYCNDNREMILVYDFMTRGNLRDHLYNTDNPLLTWKQRLQICIGAARGLHYLHTGTKHMIIHRDVKSTNILLDDNWEAKVSDFGLSRLGPIGASKAHVSTDVRGSFGYLDPEYYKRCRLTEKSDVYSLGVVLFEILCGRPPLLHTAETQQVSLSNWVRHCYYSGTITEIVDPTLKNKIEAKCLKKFCEIGMSCLSEDGTKRPLMKDVIGMLEFTLQLQETAQQAENVPLLNGEGV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01276 378 SUPERFAMILY Protein kinase-like (PK-like) 58 357 IPR011009 -
Lapu4g01276 378 FunFam receptor-like protein kinase FERONIA 44 158 - -
Lapu4g01276 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Lapu4g01276 378 SMART serkin_6 82 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01276 378 Pfam Protein tyrosine and serine/threonine kinase 88 352 IPR001245 GO:0004672|GO:0006468
Lapu4g01276 378 Gene3D Transferase(Phosphotransferase) domain 1 159 373 - -
Lapu4g01276 378 FunFam Receptor-like protein kinase FERONIA 159 373 - -
Lapu4g01276 378 Gene3D Phosphorylase Kinase; domain 1 67 158 - -
Lapu4g01276 378 MobiDBLite consensus disorder prediction 41 63 - -
Lapu4g01276 378 ProSitePatterns Protein kinases ATP-binding region signature. 88 111 IPR017441 GO:0005524
Lapu4g01276 378 ProSiteProfiles Protein kinase domain profile. 82 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01276 378 CDD STKc_IRAK 88 355 - -
Lapu4g01276 378 PANTHER OS07G0166700 PROTEIN 66 361 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01276 Lapu-Chr4 29712164 29714599 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01276 41 378 Receptor kinase-like Gene Family AT3G51550 59.467 1.16e-135 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Lapu4g01276 PK_Tyr_Ser-Thr 3.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01276 - - gmx:100804042 505.368