Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01273 ATGGCCTCCTCAGATATTAATTGGGACAGGCTAGATAAAACGAAGTTCTATGTGGTGGGAGCTGGACTCTTTACAGGTGTTACAGTAGCCCTCTACCCAGTTTCTGTTGTGAAGACTAGGCTGCAGGTTGCTTCGAAGGATACTTTGGAGAGAAGTGCATTTTCTGTTGTGAAAGGATTACTTAAAACGGATGGCATCCGTGGTTTGTATAAAGGGTTTGCTACAGTTATCACTGGTACAATTCCTACAAGAATTATATTTCTTACTGCCTTGGAGACGACAAAGGTAGCTTCCCTCAGGATGCTGGAGCCATTTAGACTATCTGAAACTACTCAGGCTGCCATATCAAATGGAGTTGCAGGCATGACATCATCACTTTTGGCACAAGCTGTGTTTGTTCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATACCCAATATAGGGGGGGTTTAGATGTTGCTCGTAAGGTGTTAAGGTCTGATGGCATTAGGGGATTATATAGAGGATTTGGTCTATCTGTCATGACTTATGTACCATCTAGTGCTGTATGGTGGTCAAGTTATGGCTCAAGTAAACATTACTTATGGAGATTCTTGGGGGATAACCCTAGTGAGGAAGCCACTCCTAGTCTACCAAAGATTGTATTAGTTCAGGCTACTGGAGGGATCATTGCTGGTGCTACTGCATCATGCATTACGACCCCGTTGGATACAATCAAGACACGGTTACAGGTGACTGGACTTGAAAAGAGAATCTCTGTAAAACAAGTTGTTAAAGATTTGATTATTGAAGATGGTTGGAAAGGTTTATATAGAGGATTAGGTCCGAGGTTTTTCAGCATGTCAGCGTGGGGCACTTCAATGATTCTGGCTTATGAATATCTGAAGCGCGTGTGTGCAAAAGATGAAGATGTGTAA 936 0.4274 MASSDINWDRLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVASKDTLERSAFSVVKGLLKTDGIRGLYKGFATVITGTIPTRIIFLTALETTKVASLRMLEPFRLSETTQAAISNGVAGMTSSLLAQAVFVPIDVVSQKLMVQGYSGHTQYRGGLDVARKVLRSDGIRGLYRGFGLSVMTYVPSSAVWWSSYGSSKHYLWRFLGDNPSEEATPSLPKIVLVQATGGIIAGATASCITTPLDTIKTRLQVTGLEKRISVKQVVKDLIIEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRVCAKDEDV* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01273 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 304 IPR018108 -
Lapu4g01273 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 97 IPR018108 -
Lapu4g01273 311 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 309 - -
Lapu4g01273 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 200 IPR018108 -
Lapu4g01273 311 SUPERFAMILY Mitochondrial carrier 9 301 IPR023395 -
Lapu4g01273 311 Pfam Mitochondrial carrier protein 223 308 IPR018108 -
Lapu4g01273 311 Pfam Mitochondrial carrier protein 21 96 IPR018108 -
Lapu4g01273 311 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Lapu4g01273 311 Gene3D Mitochondrial carrier domain 14 310 IPR023395 -
Lapu4g01273 311 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Lapu4g01273 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Lapu4g01273 311 PRINTS Mitochondrial carrier protein signature 228 250 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01273 Lapu-Chr4 29693855 29700518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01273 6 309 Chloroplast and Mitochondria Gene Families AT5G15640 74.267 3.70e-165 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01273 K15121 - gmx:100819519 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g01273 4 29693855 29700518 Lapu1g01249 1 25336603 25341949 PCT