Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01259 ATGATTCGCCAAACTGATTTAGTTATCATTGGTGTATCTGTTGGTTTGGCACTTGGAATTTTGATATCTTGCCTCATATTTTTCGGCATAAGGTGGTACAAGAAACGTGCTGCTCATCTTAGACTGTCTGCGAATGAGTCTAGTGTAACAACTCTTCCAATACGAACAAATGGATTGGGAACAAGTACCGACTTTAGTGCATCACTTGATAGTTCCATAGCCACATCGAGGTCAGAAAATCTCAAGAAAAATTCCCATTTCACTTGGTGGGGTCATCAAAACAAAGACCGGTTTGCTTCAACATCAGGCATTCTAAAGTATTCATACAAAGAAATTCAGAAGGCCACACAAAATTTCACGACAACCTTGGGACAAGGATCATTTGGGACAGTTTATAAAGCGACAATGCCTACAGGGGAGGTTGTAGCAGCGAAGGTGCTTGCACCTAATTCCAAACAAGGGGAGAAAGAATTCCACACAGAGGTATTTCTGCTAGGAAGACTGCATCACCGGAATCTTGTGAATTTGGTTGGATACTGTGTAGATAAAGGGCAACGCATACTGGTTTATCAGTATATGTGTAATGGAAGTTTAGCAAACCTTTTATATGGTGAAGAAAAGGGATTGAGTTGGGATGAAAGGCTGCAAATTGTTCTTGATATTTCACATGGAATAGAATACCTTCATGAAGGGGCAATCCCACCTGTCATACATCGCGATTTAAAGTCTGCCAACATATTGCTAGATCACTCAATGAGAGCTAAGGTTGCAGATTTTGGACTCTCAAAGGAAGAAATCTTTGATGGCCGGAATTCTGGTCTCAAAGGTACATATGGCTACATGGATCCTGCATACATTTCCTCAAGCAAGTTAACAACGAAGAGTGACATATACAGTTTTGGTATCATAGTTTTTGAGCTCATCACTGCCATCCACCCTCATCAAAATTTGATGGAGTATGTGAACCTTGCTGCAATGGATCATGATGGTATAGATGAGATACTTGACAAGAAACTTGTGGGAAAATGCAATCTTGAAGAAGTGAGGCAGCTTGCTAAGATAGGACACAAATGCTTGCACAAATCAACTAAGAAACGCCCCTCCATAGGTGAGGTTTCTCAGCTCATATCAAGAATAAAACAAAGGAGACAGCGACGTCTGACAGAAGATAACTTGTCATTTGCAAGCAACAACGTTTCTCGAGCTGTGAGTCGATTAGAAGATGGACAGGTTGAACTTAGCAGGATGTCAACCATTAGCCTAACAGAAACTGTATGA 1278 0.4085 MIRQTDLVIIGVSVGLALGILISCLIFFGIRWYKKRAAHLRLSANESSVTTLPIRTNGLGTSTDFSASLDSSIATSRSENLKKNSHFTWWGHQNKDRFASTSGILKYSYKEIQKATQNFTTTLGQGSFGTVYKATMPTGEVVAAKVLAPNSKQGEKEFHTEVFLLGRLHHRNLVNLVGYCVDKGQRILVYQYMCNGSLANLLYGEEKGLSWDERLQIVLDISHGIEYLHEGAIPPVIHRDLKSANILLDHSMRAKVADFGLSKEEIFDGRNSGLKGTYGYMDPAYISSSKLTTKSDIYSFGIIVFELITAIHPHQNLMEYVNLAAMDHDGIDEILDKKLVGKCNLEEVRQLAKIGHKCLHKSTKKRPSIGEVSQLISRIKQRRQRRLTEDNLSFASNNVSRAVSRLEDGQVELSRMSTISLTETV* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01259 425 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 386 - -
Lapu4g01259 425 ProSiteProfiles Protein kinase domain profile. 117 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01259 425 Pfam Protein kinase domain 121 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01259 425 ProSitePatterns Protein kinases ATP-binding region signature. 123 145 IPR017441 GO:0005524
Lapu4g01259 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Lapu4g01259 425 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 91 192 - -
Lapu4g01259 425 CDD STKc_IRAK 123 379 - -
Lapu4g01259 425 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Lapu4g01259 425 Gene3D Phosphorylase Kinase; domain 1 80 192 - -
Lapu4g01259 425 Gene3D Transferase(Phosphotransferase) domain 1 193 403 - -
Lapu4g01259 425 SUPERFAMILY Protein kinase-like (PK-like) 92 374 IPR011009 -
Lapu4g01259 425 FunFam Calcium/calmodulin-regulated receptor-like kinase 2 193 402 - -
Lapu4g01259 425 SMART serkin_6 117 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01259 Lapu-Chr4 29467071 29471675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01259 103 376 Receptor kinase-like Gene Family AT3G19300 42.049 3.31e-70 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Lapu4g01259 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01259 - - gmx:100819995 776.548