Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01244 ATGTCTCATCATCATCCCCATCACCACCATCTTTCTCCCAATCCCTTCGCCCCGTTATCCACTCACTCCGATTCCGATTCTGATTCTGGCTCAGTGAGTTGCTTTGTCACCGATCTCTTCGAGACTCGCTCACGCCTCTGTTCCTGCGACGACACTGACATAAACCCCTTCTCCGGCGTCGTCTGCGACCTCCATCGCTCCGAACACGTGCTAGGGTTAGGGTTTGGCGTTGAAATTGATTCCCAAAGGCGGCACGACGATGATGGTCATCGCAATAGCGTTTTCAATTTCGCGGTGGGGGATGGTTCGGGAGGGCTTAGGGTTGTAGGGTTCGGTTCGGATTCGGATGATTCGAGTGGCGAGGGGGCTGGGGTTCGTGATGAGGGTGGTGGGTTTGACGATTTCGATGCTCGGTTGTGTTGGGATAGTCTCTGTTTGGAGGATCACAGGACTCTGAATGAGGGTTTTGAATGGGAGGAAGTTGAGGAGAGGGTGAATGATAGGGAGGATTCTGGTCTGGTGGTTGGTGAGGTTGAAATTGAAGATGATGGTAATTCGGTGGCGTCGGGGTTTACTAATGCCGACGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGATGGTGGTGAAGAGGCTCTGAGGTATCTTGAGTGGGAGATTCTCTTGGCGGTTAACAATTCGGAGAGGAATGTTAACAATGGTGGTGGCTTGGAGCATGAGGGTATTGCTGGTGCTGCTGATTTGCTGACAATTCAGGATGGTTATGTGTATGCGGCGGAGTATGATGTTTTATTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGAAGCCCTCCCGCTGCAAAGAGTGTTGTGGAGGGTCTCCCATTGGTGGAGTTGTCGAAGGAGGAGTTGTTGCAGGGGAAGAACATGGCATGCGCCATTTGCAAGGATGAGATTTTGTTGGAGGAGAAGGTCAGAAGGCTTCCTTGCTCCCATTGTTACCATGGGGACTGCATTTTGCCATGGTTGGAAATTCGAAACACATGCCCAGTTTGTCGGTTTGAGCTGCCTACAGATGACCCGGACTATGAGCAGAGGAAGGTCCACAGGGCTGCTCATGATCTGTTGGAGCTTGCAACAGCAGGGATGCAATTTTGA 1140 0.5184 MSHHHPHHHHLSPNPFAPLSTHSDSDSDSGSVSCFVTDLFETRSRLCSCDDTDINPFSGVVCDLHRSEHVLGLGFGVEIDSQRRHDDDGHRNSVFNFAVGDGSGGLRVVGFGSDSDDSSGEGAGVRDEGGGFDDFDARLCWDSLCLEDHRTLNEGFEWEEVEERVNDREDSGLVVGEVEIEDDGNSVASGFTNADEEEEEEEEEEDGGEEALRYLEWEILLAVNNSERNVNNGGGLEHEGIAGAADLLTIQDGYVYAAEYDVLFGQFLENESALKGSPPAAKSVVEGLPLVELSKEELLQGKNMACAICKDEILLEEKVRRLPCSHCYHGDCILPWLEIRNTCPVCRFELPTDDPDYEQRKVHRAAHDLLELATAGMQF* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01244 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 189 351 - -
Lapu4g01244 379 SMART ring_2 306 346 IPR001841 -
Lapu4g01244 379 MobiDBLite consensus disorder prediction 184 209 - -
Lapu4g01244 379 FunFam E3 ubiquitin-protein ligase RING1-like 266 353 - -
Lapu4g01244 379 ProSiteProfiles Zinc finger RING-type profile. 306 347 IPR001841 -
Lapu4g01244 379 Pfam Ring finger domain 305 347 IPR001841 -
Lapu4g01244 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 353 IPR013083 -
Lapu4g01244 379 SUPERFAMILY RING/U-box 293 354 - -
Lapu4g01244 379 MobiDBLite consensus disorder prediction 193 209 - -
Lapu4g01244 379 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01244 Lapu-Chr4 29334659 29337497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01244 102 361 C3H Transcription Factor Family AT3G02340 40.071 3.40e-45 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01244 - - vra:106778727 613.994