Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01241 ATGAGGAAACCTGACATGATGGGAAAAGACAAACTGAACACCACCACCACCACCACCACCACCACCCCCACCATTAACACCAACAACAGCATTAAGAGCAAGCTAAGGAAAGGGTTGTGGTCGCCTGAGGAAGATGAGAAGCTGATAAGGTACATGATCACTAAGGGACAAGGGTGTTGGAGTGACATTGCTAGGAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGTCTTCGTTGGATCAACTACTTGAGACCTGATCTCAAACGTGGTGCATTTTCACCCCAAGAGGAAGAACTCATCATTCATTTGCACTCCATTCTTGGAAACAGATGGTCTCAGATTGCTGCACGTCTACCTGGTCGTACAGACAATGAGATCAAGAATTTCTGGAACTCCACACTGAAGAAAAGGTTGAAAATCAGCAGCAATAATAACAACAATACTTCATCACCAAACAACAGTGACTCATCAGACCCTAGAGATGTCATGGGGGGGATCATGCCAATGAATGAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCAACATCATCATCATCCATGCAATCCATGCATGCCAACATGGCACTAACTGACCAATTTGACCCCTTTCCCTTGTTGTCCAACCGTTATGACATGACCGGTGCAGCCGGTTTCCTTGACAACATGTCTGCATGCTTAACCCAAGTTGGTATGGTAGATCATGATGATGGGGTTGTTCATGGTGGTTATGGGGCATTGGAACCTAATAAAATGGGGTTAGAAAGCGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCATTGAGGACAATACTAGTACCCCAATTGATGTGAAAAGCCATAACAACAACCACTTCAAGAATAGTTGCTTCAATAACACTGATCATCATCATCATCATGTCCAAACCTCCAACAACGTAGTTGTAGAGGATTTGTTTGGGTTTGGAAATCATGGGCAAGCTGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATGTCCTATTTTCCTTCCCTTGATTTCCAAGTTTAA 1056 0.4422 MRKPDMMGKDKLNTTTTTTTTTPTINTNNSIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKISSNNNNNTSSPNNSDSSDPRDVMGGIMPMNEHDLMTMCMDSSSSTSSSSMQSMHANMALTDQFDPFPLLSNRYDMTGAAGFLDNMSACLTQVGMVDHDDGVVHGGYGALEPNKMGLESDFSLPPLESRSIEDNTSTPIDVKSHNNNHFKNSCFNNTDHHHHHVQTSNNVVVEDLFGFGNHGQAENFRMGEWDFEGLMQDMSYFPSLDFQV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01241 351 Pfam Myb-like DNA-binding domain 37 84 IPR001005 -
Lapu4g01241 351 Pfam Myb-like DNA-binding domain 90 134 IPR001005 -
Lapu4g01241 351 FunFam Transcription factor MYB46 91 163 - -
Lapu4g01241 351 MobiDBLite consensus disorder prediction 264 284 - -
Lapu4g01241 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 84 IPR017930 -
Lapu4g01241 351 MobiDBLite consensus disorder prediction 141 160 - -
Lapu4g01241 351 ProSiteProfiles Myb-like domain profile. 85 135 IPR001005 -
Lapu4g01241 351 MobiDBLite consensus disorder prediction 141 167 - -
Lapu4g01241 351 FunFam MYB transcription factor 34 90 - -
Lapu4g01241 351 Gene3D - 91 163 - -
Lapu4g01241 351 MobiDBLite consensus disorder prediction 268 284 - -
Lapu4g01241 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 139 IPR017930 -
Lapu4g01241 351 CDD SANT 92 135 IPR001005 -
Lapu4g01241 351 Gene3D - 34 90 - -
Lapu4g01241 351 PANTHER MYB DOMAIN PROTEIN 55 31 305 - -
Lapu4g01241 351 CDD SANT 40 84 IPR001005 -
Lapu4g01241 351 MobiDBLite consensus disorder prediction 10 28 - -
Lapu4g01241 351 SUPERFAMILY Homeodomain-like 35 131 IPR009057 -
Lapu4g01241 351 SMART sant 89 137 IPR001005 -
Lapu4g01241 351 SMART sant 36 86 IPR001005 -
Lapu4g01241 351 MobiDBLite consensus disorder prediction 1 28 - -
Lapu4g01241 351 ProSiteProfiles Myb-like domain profile. 32 84 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01241 Lapu-Chr4 29279962 29283737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01241 1 351 MYB Transcription Factor Family AT3G08500 47.200 4.99e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu4g01241 Myb_DNA-binding 5.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01241 K09422 - gmx:100813660 545.428