Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01240 ATGTCAATGCCTTTTCTTACAAACTTGGACCGAGTTGAGATGCTCCTCACTGCATCAAACTCTGTTAGTGCATCCAATAAAAGATGGCACTCTGCATTCATGGCCATCTATTGCTCCCGAGCTATCATGTCACTCTCCACTCGCAACGAAACACACAAAATCAAAGCAAAAGTCTCACCTACACCAAAGCCAACACCATCTTTTGTCATGGTAGATTTGAACCCTCACCATTCCTTTGGTATTGACCAAACAGCCCTCACGGATATTGTCAAAGAGAAAGACCTTGAGAACCTTGATAAATTAGGTGGGGTTGAAGGGGTGGCAACAGCCCTTGAAACCCACGTTCAGTATGGTATCAAAGGTGGTGCTGATGATGGTGAAGACATCACACGTAGAACACAAGTGTTTGGTTCCAACACTTACCACAAACCACCTTCCAAAGGGTTCTTCCACTTTGTGGTGGAAGCATTTAAGGATGTCACTATTCTCATTCTTTTGGCTTGTGCTGCTCTATCCCTTGGCTTTGGCATCAAGGAGCATGGAATCAAAGAAGGTTGGTACGATGGTGGAAGCATCTTTGTTGCAGTGTTCATTGTGATTTCCTTGTCAGCAGTGAGCAACTTCAGACAGAACAGACAGTTTGACAAGCTGTCTCAGGTGAGCAACGATATACAAATTGATGTGGTGAGAAGTGGGAGGCGTCAACATGTGTCAATCTTTGAAATAGTGGTTGGTGATGTTATTTGCTTGAAGATTGGGGATCAAGTGCCAGCAGATGGGTTGTTCATAGAAGGGCATTCACTTAGAGTGGATGAATCAAGCATGACAGGAGAGAGTGATCATGTTGAGATTAGTAGACAGCACCGTCCTTTTTTGTTCTCAGGCACCAAGGTGGCTGATGGGTATGCTAAAATGCTTGTTACCTCAGTTGGCATGAACACAACATGGGGCCAAATGATGAGTTCAATAAGCCGAGATATTGATGAGCAAACTCCTTTGCAAGAGAGGCTAAACAAGCTTACATCGTCCATTGGAAAGGTTGGTTTGGCTGTGGCTTTTCTTGTCCTTGTTGTTTTGTTGGTTAGGTACTTCACAGGGAACACAAAGGATGAGAATGGGGTAAGAGAGTTCAATGGAAGCAAGACCAAGTTTGATGATATAATGAATGCTGTTGTGGGAATTATTGCTGATGCAGTCACCATTGTCGTTGTTGCAATCCCTGAGGGTCTTCCATTGGCTGTGACTCTCACTCTGGCTTATTCAATGAAGAAAATGATGGCTGACCAAGCAATGGTGAGAAAGCTCTCAGCATGTGAGACAATGGGTTCTGCCACCACAATTTGTACAGATAAGACTGGTACTCTCACACTCAATGAGATGAAAGTGACCAAGTTCTGGCTTGGCCTAGAACCTGTGACAAAAACGGAAAATGCCTACACAAAGGTTGCTCCATTTGTTCTTCAACTTATCCAAGAAGGGGTGGCTCTAAACACAACTGGTAGTGTGCACAAGTCCAATAAATCAGGTTCTGAATTTGAGTTTTCTGGTAGTCCCACAGAAAAAGCCATCCTATCATGGGCAGTTTTGGAATTGAACATGGAGACGGAGCACATGACAAAAAGCTGTTCCATCATTCATGTTGAGACCTTCAACTCAAAGAAGAAAAAAAGTGGAGTTTTATTGAGAAGGAAGGCAGACAACAAAGTTAGTGCTCACTGGAAAGGAGCAGCTGAGATGGTGCTAAAGATGTGCTCAAGATACTATGATGCTTCAGGCATTGTGAAAGATCTTGACCATGATAGCAGGTTGAAGTTTGAACACATCATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCACATGTAGAAGTAGCTGAGGAAGAGCTTGGAGATGAAGAAGGAAACACCATGGTGAAAGTGAAAGACAATGGCTTAACTTTGTTAGGGCTTGTTGGAATTAAAGATCCTTGTCGTCCAGGGGTGAAGAATGCTGTGAAAGCTTGCCAAAATGCTGGTGTGAATGTCAAAATGATCACAGGTGACAACGTTTTCACTGCAACGGCTATAGCAAGCGAATGTGGCATACTCCAGCCAAATCAGGACACGGCTGGAGCAGTGATTGAAGGAGAGGAATTTCGCAACTACACACCTGAAGAGAGGTTGGAAAAGGTGGAAAAAATCTGTGTGATGGCTAGATCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGTCTGAAGCAGAAAGGCCATGTAGTTGCTGTCACTGGGGATGGCACAAATGACGCACCAGCACTCAAAGAAGCTGATATTGGACTCTCTATGGGAATTCAAGGTACTGAAGTGGCTAAAGAGAGCTCAGACATTGTTATATTGGATGACAATTTTGCATCTGTGGTCACTGTCTTGAGGTGGGGAAGGTGTGTTTACAACAACATCCAGAAGTTTATTCAGTTTCAATTGACAGTGAATGTAGCTGCACTTGCTATCAACTTTGTGGCAGCAGTGTCAGCCGGGGAAGTGCCACTCACAGCAGTACAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCTCTTGCAACAGAAAAGCCTACCAATGAATTGATGGACAAACCACCAGTTGGTAGAACAAAACCTCTCATCACCAATGTCATGTGGAGGAATCTATTGGCTCAAGCTTTGTACCAGATAGCAGTTTTGCTTACTCTTCAATTCAAAGGTGAGTCTATCTTTGGTGTGACATCAGGGGTAAATGACACATTGATTTTCAACACATTTGTTCTCTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAGGAATGTGTTCAAAGGCATACACAGGAGCAAGTTGTTTTTAGGCATTATTGGCATAACAATCATCCTTCAGGTTGTGATGGTTGAGTTTCTCAAGAAATTTGCTGACACAGAGAGGCTAAATTGGGGGCAATGGGCTATCTGCATTGGTCTAGCTGCAGTTTCCTGGCCAATTGGTTGGATTGTGAAGTTGATACCTGTCCCAGATAAACCATTGCTCAATATTTTGAGGATGAAGAAATGA 3087 0.4328 MSMPFLTNLDRVEMLLTASNSVSASNKRWHSAFMAIYCSRAIMSLSTRNETHKIKAKVSPTPKPTPSFVMVDLNPHHSFGIDQTALTDIVKEKDLENLDKLGGVEGVATALETHVQYGIKGGADDGEDITRRTQVFGSNTYHKPPSKGFFHFVVEAFKDVTILILLACAALSLGFGIKEHGIKEGWYDGGSIFVAVFIVISLSAVSNFRQNRQFDKLSQVSNDIQIDVVRSGRRQHVSIFEIVVGDVICLKIGDQVPADGLFIEGHSLRVDESSMTGESDHVEISRQHRPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISRDIDEQTPLQERLNKLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKDENGVREFNGSKTKFDDIMNAVVGIIADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWLGLEPVTKTENAYTKVAPFVLQLIQEGVALNTTGSVHKSNKSGSEFEFSGSPTEKAILSWAVLELNMETEHMTKSCSIIHVETFNSKKKKSGVLLRRKADNKVSAHWKGAAEMVLKMCSRYYDASGIVKDLDHDSRLKFEHIIQGMAASSLRCIAFAHVEVAEEELGDEEGNTMVKVKDNGLTLLGLVGIKDPCRPGVKNAVKACQNAGVNVKMITGDNVFTATAIASECGILQPNQDTAGAVIEGEEFRNYTPEERLEKVEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTNELMDKPPVGRTKPLITNVMWRNLLAQALYQIAVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHRSKLFLGIIGITIILQVVMVEFLKKFADTERLNWGQWAICIGLAAVSWPIGWIVKLIPVPDKPLLNILRMKK* 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01240 1028 Gene3D - 458 659 IPR023299 GO:0000166
Lapu4g01240 1028 SMART Cation_ATPase_N_a_2 100 177 IPR004014 -
Lapu4g01240 1028 ProSitePatterns E1-E2 ATPases phosphorylation site. 450 456 IPR018303 -
Lapu4g01240 1028 PRINTS H+-transporting ATPase (proton pump) signature 758 774 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01240 1028 PRINTS H+-transporting ATPase (proton pump) signature 790 815 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01240 1028 PRINTS H+-transporting ATPase (proton pump) signature 605 623 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01240 1028 SUPERFAMILY Calcium ATPase, transduction domain A 225 322 IPR008250 -
Lapu4g01240 1028 Gene3D - 445 803 IPR023214 -
Lapu4g01240 1028 FunFam Calcium-transporting ATPase 653 803 - -
Lapu4g01240 1028 CDD P-type_ATPase_Ca_PMCA-like 129 891 - -
Lapu4g01240 1028 FunFam Calcium-transporting ATPase 200 324 - -
Lapu4g01240 1028 Pfam E1-E2 ATPase 225 426 - -
Lapu4g01240 1028 FunFam Calcium-transporting ATPase 775 1017 - -
Lapu4g01240 1028 SUPERFAMILY HAD-like 446 863 IPR036412 -
Lapu4g01240 1028 Pfam Cation transporter/ATPase, N-terminus 101 172 IPR004014 -
Lapu4g01240 1028 NCBIfam HAD-IC family P-type ATPase 391 488 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01240 1028 NCBIfam HAD-IC family P-type ATPase 731 839 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu4g01240 1028 SUPERFAMILY Calcium ATPase, transmembrane domain M 102 1015 IPR023298 -
Lapu4g01240 1028 FunFam Calcium-transporting ATPase 458 659 - -
Lapu4g01240 1028 SFLD p-type atpase 430 811 IPR044492 -
Lapu4g01240 1028 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 455 656 IPR023299 GO:0000166
Lapu4g01240 1028 Gene3D - 155 1012 - -
Lapu4g01240 1028 PANTHER CATION TRANSPORTING ATPASE 64 1015 - -
Lapu4g01240 1028 Pfam Cation transporting ATPase, C-terminus 843 1013 IPR006068 -
Lapu4g01240 1028 Gene3D - 127 324 - -
Lapu4g01240 1028 NCBIfam calcium-translocating P-type ATPase, PMCA-type 93 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Lapu4g01240 1028 SFLD C1.7: P-type atpase like 430 811 - -
Lapu4g01240 1028 Pfam haloacid dehalogenase-like hydrolase 445 772 - -
Lapu4g01240 1028 PRINTS P-type cation-transporting ATPase superfamily signature 758 777 - -
Lapu4g01240 1028 PRINTS P-type cation-transporting ATPase superfamily signature 448 462 - -
Lapu4g01240 1028 PRINTS P-type cation-transporting ATPase superfamily signature 652 663 - -
Lapu4g01240 1028 PRINTS P-type cation-transporting ATPase superfamily signature 271 285 - -
Lapu4g01240 1028 PRINTS P-type cation-transporting ATPase superfamily signature 674 684 - -
Lapu4g01240 1028 PRINTS P-type cation-transporting ATPase superfamily signature 782 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01240 Lapu-Chr4 29269214 29272306 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01240 12 1028 Primary Pumps ATPases AT3G22910 68.462 0.0 1345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01240 K01537 - gmx:100793918 1794.25