Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01238 ATGCAGACTCAGCATACCTGTGTTCATCCTGTGATGCTCGTGTGCATTCAGCTAACCGTGTGGCCTCAAGGCACGAGCAAAGCTGATGCAGCTTCTCTTTGTTCCTCGTGTGATGCTGACATTCACTCCGCAAACCCTCTTGCCAGCCGCCACCACCGTGTCCCCATTCTCCCCATCTCGGGTTCCCTCTTGGGAGAACCAGATCATGAACCGGAACACGGATTCGTGAACGAGGTGGAAGAGGAAGAGGAAGAGTTTTTTGACGAGTATGACGATGAGATTGAAGCTGCTTCGTGGTTGTTGCCGCATCCTGTGAAGGGTAACGAAGAGGAGGAGAATGGTTTTTTGTACGGTGATGAGTATTTGGAGAACCTCGTGGATTGTAACTCGTGCGGTCACAATAATAACCAGTTTAGCAACGCTTTTCAGCATCAGCAGAACTACAACACTGTTCTTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCTGCAACAATCGCAGCATTTTCAACCGGGTTTGGAGTTTGACTCTTCAAAAGCTGGATTCAGTTACGATGGTTCTCTTAGTCAAAGTGTATCAGTTTCATCAATGGATGTTGGTGTAGTCCCAGAATCAACAATAAGTGACATCTCAATTTCCTATTCAAAGTCACCAATAGGGACAAGTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCACTTGATAGAGAGGCCAGAGTCCTAAGATACAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACTAGACCACGCATCAAGGGTAGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTGGACCAAATGCTCTCCACAACACTATTCAATGACGTTGGAGGTACCATTTTTCCATCTTTCTAG 927 0.4595 MQTQHTCVHPVMLVCIQLTVWPQGTSKADAASLCSSCDADIHSANPLASRHHRVPILPISGSLLGEPDHEPEHGFVNEVEEEEEEFFDEYDDEIEAASWLLPHPVKGNEEEENGFLYGDEYLENLVDCNSCGHNNNQFSNAFQHQQNYNTVLQNYAVVPVQVLQQSQHFQPGLEFDSSKAGFSYDGSLSQSVSVSSMDVGVVPESTISDISISYSKSPIGTSDLFPPLPMPSHLTPLDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSTTLFNDVGGTIFPSF* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01238 308 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 25 295 IPR045281 GO:0009909
Lapu4g01238 308 CDD Bbox1_BBX-like 28 56 - -
Lapu4g01238 308 ProSiteProfiles CCT domain profile. 239 281 IPR010402 GO:0005515
Lapu4g01238 308 Pfam CCT motif 239 281 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01238 Lapu-Chr4 29243154 29245278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01238 9 308 C2C2-CO-like Transcription Factor Family AT3G02380 48.408 6.45e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu4g01238 CCT 1.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01238 - K12135 gmx:100782635 432.565