Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01236 ATGGGAAAGCCAAAAGGAAGAGAAGTTGCTCTGTGTTTTGTGGTTTTCTTCTGGTTTTGGAGCTCTTCCAATGCTTTGCTTTCTCCTAAGGGAGTAAACTTTGAAGTGCAAGCTTTAATGGGCATAAAAGCTTTTCTTGTGGATCCCCATGGTATTCTAGATAATTGGGATGGGGATGCAGTTGATCCATGCAGCTGGAATATGGTCACGTGTTCCCCTGAGAATCTTGTTATTAGCCTGGGCATTCCCAGTCAAAATTTATCTGGTATTCTATCTCCAAGTATAGGAAACCTAACATATCTTCAGACTGTGGTGCTGCAAAATAACAACATAACTGGGCCAATCCCTTCAGAGATAGGAAAACTTTCTAAGCTTCAAACTCTTGATCTCTCTGACAACTTCTTCAATGGGGAAATTCCTCCCTCTCTGGGTCACCTGAGAAGCCTCCAGTACTTGAGGCTTAATAATAACAGTTTTGATGGAGAATGCCCAGTGTCACTAGCTAACATGGCACAGCTTGCTTTTCTTGACTTGTCCTACAATAATCTTAGTGGCCCTATACCTAGAATTTTGGCCAAATCCTTCAGTATTGTAGGAAACCCCCTAGTCTGCGCTACAGAAAAAGAAAAAAATTGCCATGGGATGACACTCATGCCCATGTCAATGAACTTGAACAATACTGAGGCAATTGTACTAATGTTGATAGCAAATCTCTTTGCTTCCATAGACGCTTTACCATCTGGGAGAACAAAGGCTCACAAAATGGCCATTGCCTTTGGTCTGAGTCTTGGATGCCTCTGCTTGATAGTTTTTGGCCTTGGACTTGTTCTATGGAGGAGGCACAAGCATAAACAACAGTCCTTCTTTGATGTTAAAGACCAGCATCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAACTAAGAGAACTACAGATTGCTACTAACAACTTCAGCAATAAAAACATTCTGGGCAAGGGTGGTTTTGGAAATGTCTACAAGGGAATTCTCCCAGATGGCTCTCTTGTGGCAGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGATATACAATTTCAGACTGAAGTTGAAATGATCAGCTTGGCGGTGCACCGAAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAAGGTAAGCCAGTGTTGGATTGGGGCACAAGGAAGCAAATTGCCATAGGAGCAGCAAGGGGACTGCTATACCTGCATGAGCAGTGTGATCCAAAGATAATCCACAGAGATGTGAAGGCTGCAAATATATTGCTTGATGACTATTGTGAGGCAGTGGTAGGAGATTTTGGGTTGGCAAAGCTTTTAGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACAGTGGGGCATATTGCACCAGAGTATCTTTCCACAGGGCAATCTTCTGAGAAGACTGACGTCTTTGGATTTGGCATTCTGCTTCTTGAATTGATCACAGGCCAAAGGGCACTGGAATTTGGAAAAGCAGCCAACCAAAAAGGAGCCATGCTTGATTGGGTAAGGAAAATTCATCAAGAGAAGAAGTTTGAGTTGCTTGTGGACAAGGATCTCATGAACAACTATGACAGGATTGAGCTTGAGGAAATTGTTCAAGTAGCACTCTTGTGCACACAATATCTTCCTGGCCACAGGCCCAGAATGTCTGAAGTTGTACGCATGCTTGAAGGTGATGGCCTTGCAGAGAAATGGGAAGCTTCTCAAAGTGCTGACACCACCAAATGCAGCAAACCACATGAACTCTCTTCATCAGATAGGTATTCTGACCTTACTGATGACTCTTCTTTGTTGGTCCAAGCAATGGAACTCTCAGGCCCCAGATGA 1923 0.4353 MGKPKGREVALCFVVFFWFWSSSNALLSPKGVNFEVQALMGIKAFLVDPHGILDNWDGDAVDPCSWNMVTCSPENLVISLGIPSQNLSGILSPSIGNLTYLQTVVLQNNNITGPIPSEIGKLSKLQTLDLSDNFFNGEIPPSLGHLRSLQYLRLNNNSFDGECPVSLANMAQLAFLDLSYNNLSGPIPRILAKSFSIVGNPLVCATEKEKNCHGMTLMPMSMNLNNTEAIVLMLIANLFASIDALPSGRTKAHKMAIAFGLSLGCLCLIVFGLGLVLWRRHKHKQQSFFDVKDQHHEEVYLGNLKRFQLRELQIATNNFSNKNILGKGGFGNVYKGILPDGSLVAVKRLKDGNAIGGDIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGAMLDWVRKIHQEKKFELLVDKDLMNNYDRIELEEIVQVALLCTQYLPGHRPRMSEVVRMLEGDGLAEKWEASQSADTTKCSKPHELSSSDRYSDLTDDSSLLVQAMELSGPR* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01236 640 ProSiteProfiles Protein kinase domain profile. 319 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01236 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Lapu4g01236 640 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Lapu4g01236 640 Pfam Protein kinase domain 320 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01236 640 FunFam Somatic embryogenesis receptor kinase 1 288 395 - -
Lapu4g01236 640 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Lapu4g01236 640 SMART serkin_6 319 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g01236 640 Gene3D Phosphorylase Kinase; domain 1 288 395 - -
Lapu4g01236 640 MobiDBLite consensus disorder prediction 600 622 - -
Lapu4g01236 640 SUPERFAMILY Protein kinase-like (PK-like) 296 589 IPR011009 -
Lapu4g01236 640 FunFam Somatic embryogenesis receptor-like kinase 1 396 608 - -
Lapu4g01236 640 Gene3D Transferase(Phosphotransferase) domain 1 396 608 - -
Lapu4g01236 640 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Lapu4g01236 640 SUPERFAMILY L domain-like 35 320 - -
Lapu4g01236 640 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 599 - -
Lapu4g01236 640 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 214 - -
Lapu4g01236 640 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01236 Lapu-Chr4 29223981 29228973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01236 11 640 Receptor kinase-like Gene Family AT5G16000 76.138 0.0 977
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lapu4g01236 Pkinase 3.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01236 - - gmx:100806650 1159.05