Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01224 ATGGAAGCAGAAGAACACTTTCAACTTCCTCATCTATTTCACGTTGCAAGTTCTCCGGTTCACGGCATGGAAAGCGTGGTGGCTACGGTTAGCGGTTACCACGGCTCCGAGCGGTTCGATCTCATCAAGCTGATTTCACATGCCGGCGCCAATTACGTTGGCACAATGTCGAAATCGATAACGCATCTGGTATGCTGGAAATTTGAAGGAAAGAAATATGATATTGCGTTGAAGTTTAGAATACCTGTAGTGAACCACCAATGGATTGAGGACTGCATAAAGGAAGGAAGGCGTGTTCCAGAAGATTCTTATACCTTGCAAAGTGGACATGAAGTAGGGCGATTGTTACTGGAAGTTCCCCTCACTGTTCGAACCAGTAGCTTGACAAAGAAAAAATTGGTCAGTGATAGGTTACATGATACTGGGTCTGAAAGGCAAAAAACTAACTTTGGTTCTGGAACTTCAAAAACTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGATGAGTCAAGTTCATATTCGTCTAGACTGTCAAGGAAAGGAAAAAGGAACATTTGCAATGGTAAGGGCGTCATTACTGTCGCTGGACCTTCTCGTAAAGGAAGAAGACTCACCAGAAATCTTGTTGATGAAGTGGTGTTGGCTCCTTCACTTTTGGATTTAAGCCCAGATGACCGCCTTTTTGAAATGGATAGACTTCAGACAGATGCTGAAGCTACCTCTAGTGTTTCTGGCAGTGTCCATAGTAACATTATTCTACAAAATGCTGAAGGACCTAATGCTGGATCAAGTAATGAAAGTAGAATTATCAGTAGTGGTTCAGATGATATTGAACAGATCAAAGATTCAAGTCATATATCTACTCCTAGAAATTCTACTTTGTTTATAGAAGATGACGTACCTATGGCACAAACACCCATAGATTTATGTTCCAGTGATGATGAAAAATTCACGGATGGTGATCTGGTTGACAATGGTGCTGGCTTACCTACTTCAACAGAAATGTCATGTGTTATATGTTTCACAGATTTTAGCTCAACACGAGGGATTCTGCCTTGTGGACATCGATTTTGTTTTCCATGCATCCAGGGTTGGGTTGATCATAGGACTTCAATGAGAAAAATATCAACTTGCCCTTTGTGCAAGGAAAGTTTTGCCATGATTAAGAAAGTTGAGCATGCAGTCACGGCTGATCAAAAAGTATACTCCCAGACAATCCCATGTAACAATTCAGCCTCGGATATTTTTATCTCCATGGATCAAGAATTACAGGATAATATGTTTGAGTCTTCACAAACTGGAGCTTGTGTAATCTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAGTTGTGATATTTGCCGAATTCGAAAGATCCATTCTTATTGCATGGACCCTCCTCTGCGGCCATGGACATGCAATCATTGCAAGGAACTTCGGATGCTTTATCGTACTAATCACTATTAG 1473 0.4121 MEAEEHFQLPHLFHVASSPVHGMESVVATVSGYHGSERFDLIKLISHAGANYVGTMSKSITHLVCWKFEGKKYDIALKFRIPVVNHQWIEDCIKEGRRVPEDSYTLQSGHEVGRLLLEVPLTVRTSSLTKKKLVSDRLHDTGSERQKTNFGSGTSKTYVLEDSCLMKKHDESSSYSSRLSRKGKRNICNGKGVITVAGPSRKGRRLTRNLVDEVVLAPSLLDLSPDDRLFEMDRLQTDAEATSSVSGSVHSNIILQNAEGPNAGSSNESRIISSGSDDIEQIKDSSHISTPRNSTLFIEDDVPMAQTPIDLCSSDDEKFTDGDLVDNGAGLPTSTEMSCVICFTDFSSTRGILPCGHRFCFPCIQGWVDHRTSMRKISTCPLCKESFAMIKKVEHAVTADQKVYSQTIPCNNSASDIFISMDQELQDNMFESSQTGACVICRGREPEDLLESCDICRIRKIHSYCMDPPLRPWTCNHCKELRMLYRTNHY* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01224 490 ProSitePatterns Zinc finger RING-type signature. 355 364 IPR017907 -
Lapu4g01224 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 333 404 IPR013083 -
Lapu4g01224 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 483 IPR013083 -
Lapu4g01224 490 SMART BRCT_7 20 96 IPR001357 -
Lapu4g01224 490 Pfam Zinc finger, C3HC4 type (RING finger) 339 383 IPR018957 GO:0046872
Lapu4g01224 490 SMART ring_2 339 383 IPR001841 -
Lapu4g01224 490 ProSiteProfiles BRCT domain profile. 15 106 IPR001357 -
Lapu4g01224 490 SUPERFAMILY BRCT domain 19 107 IPR036420 -
Lapu4g01224 490 SUPERFAMILY RING/U-box 338 390 - -
Lapu4g01224 490 ProSiteProfiles Zinc finger RING-type profile. 339 384 IPR001841 -
Lapu4g01224 490 SUPERFAMILY FYVE/PHD zinc finger 432 481 IPR011011 -
Lapu4g01224 490 PANTHER F5A8.9 PROTEIN 146 487 - -
Lapu4g01224 490 Pfam twin BRCT domain 26 88 IPR001357 -
Lapu4g01224 490 Gene3D BRCT domain 20 105 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01224 Lapu-Chr4 29078008 29083749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01224 56 112 Core DNA Replication Machinery Family AT4G02110 46.552 7.92e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01224 - - gmx:100815034 783.097