Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01200 ATGGATCATTACAAGGTTCTCGGCTTGCACCGAACCGCGACCAAGGAGGAAATCAAAACCGCTTTCAAGAAACTAGCGTTTGAGTTCCACCCAGACAAGCATTCCCAATCGCCGAGGGCCATTAGGGAAAACGCCACAATTCGATTCAAGCAGGTATCTGAGGCCTACGAGGTCCTCATGGACGATCGCAAGCGCGCCGACTACAATATCCGGCGGAGATCCGGCGCCGACGGCGGAAACAACCACTATTCTCAGTATAGCTACGGATACAGTAGGAGCGGGAGCAGGTACGAGTACAAACCCAGGTCTGGTGGTACTGGTGGCTTAGCTTCCAATTTTGAACTGGCTCTTCGGATTTTGACGGCGCGGTCTTCACTTCTTTATCTCGGTTTCGCAGCTGCTATATTAGGTGGGATAGTTGTCATTGATTCAAGTGGAGAATCCTTATGGAGAATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAAGTCCATTGAGAAAGCCAAAGCGTATAGAGAAGATAACATGAAGGAACGTCCTTGA 546 0.489 MDHYKVLGLHRTATKEEIKTAFKKLAFEFHPDKHSQSPRAIRENATIRFKQVSEAYEVLMDDRKRADYNIRRRSGADGGNNHYSQYSYGYSRSGSRYEYKPRSGGTGGLASNFELALRILTARSSLLYLGFAAAILGGIVVIDSSGESLWRMQNSGKSFEEAMKSIEKAKAYREDNMKERP* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01200 181 CDD DnaJ 2 61 IPR001623 -
Lapu4g01200 181 SUPERFAMILY Chaperone J-domain 1 91 IPR036869 -
Lapu4g01200 181 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Lapu4g01200 181 SMART dnaj_3 1 64 IPR001623 -
Lapu4g01200 181 Gene3D DnaJ domain 1 112 IPR036869 -
Lapu4g01200 181 PANTHER CO-CHAPERONE PROTEIN DJLA 4 98 - -
Lapu4g01200 181 PRINTS DnaJ domain signature 4 22 IPR001623 -
Lapu4g01200 181 PRINTS DnaJ domain signature 64 83 IPR001623 -
Lapu4g01200 181 PRINTS DnaJ domain signature 44 64 IPR001623 -
Lapu4g01200 181 PRINTS DnaJ domain signature 22 37 IPR001623 -
Lapu4g01200 181 FunFam DnaJ domain protein 1 90 - -
Lapu4g01200 181 Pfam DnaJ domain 2 69 IPR001623 -
Lapu4g01200 181 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01200 Lapu-Chr4 28698025 28704916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01200 3 72 C2H2 Transcription Factor Family AT1G74250 37.143 1.86e-10 57.0