Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01196 ATGGATAGGCTCATAAAGTTAGAGCCATCAAACACAGTCCTTATCAGAGTAGAACCAGGTCAAAAGTGCCAAGGCAAAATCACCTTACACAACGTCATGCACACAATGCCTGTGGCCTTCAGGCTTCAACCCCTCATCAAAACCCGTTATGCAGTGAAGCCACACTCTGGTATCATCTCCCCCTTAGCCACACTCACCGTAGAAATCACCTATGTAGGCTCCACCACCACCTTCCCTCACTCCAACGATTCCTTCCTTCTACACAGCGTCTTGGTCCCCGGCGCCTCCATCAGGGAACCCTCCTCCATGTTCGACGCCGTCCCCTCCGACTTGTTCAAGAAAAAACAAGTCTTCGTCGACAGCGGCATAAAGGTCATGTTTTTAGGGTCACACATTCTGGCCCAGTTGATCTCGCTCGGCGAAAACGATGAGGTGAGGGAAGCCCTAGAGAGAAGCGACCCTTCATGGAGGCTTGTGAACAGCACCGACCCACATGGCCAGACGCTGCTCCACGTGGCGATCGCGCGGGATAGAGCTGATCTTGTTCAACTGCTTCTGGAGTTCGAGGCTGATACCGAGGCAACGAACCGCTCTGGGTTGACCCCACTTGAGGCTGCGGCATCGTGTAACGAAGCGTTGATCGTGGAGCTTCTTCTGGCCCGTTCGGCCAATACGGAGCGAGCTGAATCGGCAGTGTTCGGGCCGATTCATCATGCGGCCAGAGGAGGACACGTGGAGGTCCTGAGACTCCTCTTGCTCAAAGGCGCCAAAGTGGACTCGCTCACGAAAGATGGCAATACTGCTTTGCACGTCGCAGTTGAGGAGCGTAGAAGAGACTGTGTTAGACTTCTTCTAGCCAACGGTGCCAGAACTGACATTAAGAACGCAAGAGAAGGTGACACCCCTTTGCACATGGCGGCAGCAGCAGGAGACGAGAGCATGGTGAAGCTCCTGCTGCAAAAGGGTCGTGCCAACAAAGACATTCGAAACGCGCAAGGAAGAACCGCCTACGACGTCGCAGTGGAGAACGGCCACGCGCGTCTCTTCGACGCCCTGAGTTTGGGCGACAAGCTGTGCGCGGCCGCAAAGAAAGGCGAAGTGAGAAACATCCAGAAGCTTCTGGAGAACGGCGCGGACCTCAACGGGAGGGACCAGAACGGTTGGACGGCGCTGCATCGAGCCTCGTTCAAAGGGCGAATTGATGTAGTGAAGGTTCTGGTGGAGAGAGGGGTGGAGGTGGACGCGAAGGACCAAGAGGGGTACACGGCACTGCACTGTGCGGCGGAGGCGGGGCACGCCGACGTGACGGAGTTTTTGGTGAAGAAAGGTATGGATGTTGAGGCGAGAACTAGGAAGGGTGTAAGCGCATTGCAGATAACAGAGTCATTGCACTATGTGGGGATAACGAGGGTTCTTGTAAACGGTGGGGCAAGTAGGGAAAATTCTGATCAAGTTGCTGCATTTGGTGGAATTGCGTTTGGGAGTACGATAAGGGAAGGTGGGGGTGTTGTGAAGAAGAGGAGGGGTGGTGACAGAGGTAATAGCAGAGTGTTGAATAATGGTGCTGGCTTTGGTCGTTCAGTGGCTCTAGCTGTGCTCTAA 1602 0.5456 MDRLIKLEPSNTVLIRVEPGQKCQGKITLHNVMHTMPVAFRLQPLIKTRYAVKPHSGIISPLATLTVEITYVGSTTTFPHSNDSFLLHSVLVPGASIREPSSMFDAVPSDLFKKKQVFVDSGIKVMFLGSHILAQLISLGENDEVREALERSDPSWRLVNSTDPHGQTLLHVAIARDRADLVQLLLEFEADTEATNRSGLTPLEAAASCNEALIVELLLARSANTERAESAVFGPIHHAARGGHVEVLRLLLLKGAKVDSLTKDGNTALHVAVEERRRDCVRLLLANGARTDIKNAREGDTPLHMAAAAGDESMVKLLLQKGRANKDIRNAQGRTAYDVAVENGHARLFDALSLGDKLCAAAKKGEVRNIQKLLENGADLNGRDQNGWTALHRASFKGRIDVVKVLVERGVEVDAKDQEGYTALHCAAEAGHADVTEFLVKKGMDVEARTRKGVSALQITESLHYVGITRVLVNGGASRENSDQVAAFGGIAFGSTIREGGGVVKKRRGGDRGNSRVLNNGAGFGRSVALAVL* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01196 533 SMART ANK_2a 264 293 IPR002110 GO:0005515
Lapu4g01196 533 SMART ANK_2a 332 361 IPR002110 GO:0005515
Lapu4g01196 533 SMART ANK_2a 419 448 IPR002110 GO:0005515
Lapu4g01196 533 SMART ANK_2a 198 227 IPR002110 GO:0005515
Lapu4g01196 533 SMART ANK_2a 298 328 IPR002110 GO:0005515
Lapu4g01196 533 SMART ANK_2a 231 260 IPR002110 GO:0005515
Lapu4g01196 533 SMART ANK_2a 165 194 IPR002110 GO:0005515
Lapu4g01196 533 SMART ANK_2a 386 415 IPR002110 GO:0005515
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat profile. 198 230 IPR002110 GO:0005515
Lapu4g01196 533 Pfam MSP (Major sperm protein) domain 5 103 IPR000535 -
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat region circular profile. 264 295 - -
Lapu4g01196 533 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 128 IPR000535 -
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat profile. 419 451 IPR002110 GO:0005515
Lapu4g01196 533 SUPERFAMILY PapD-like 2 135 IPR008962 -
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat region circular profile. 386 417 - -
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat region circular profile. 298 322 - -
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat region circular profile. 419 451 - -
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat profile. 298 322 IPR002110 GO:0005515
Lapu4g01196 533 Gene3D Immunoglobulins 1 124 IPR013783 -
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat profile. 165 197 IPR002110 GO:0005515
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat profile. 235 263 IPR002110 GO:0005515
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat region circular profile. 165 197 - -
Lapu4g01196 533 PANTHER MOLTING PROTEIN MLT-4 235 483 - -
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat profile. 386 418 IPR002110 GO:0005515
Lapu4g01196 533 SUPERFAMILY Ankyrin repeat 159 483 IPR036770 -
Lapu4g01196 533 Pfam Ankyrin repeats (3 copies) 235 295 IPR002110 GO:0005515
Lapu4g01196 533 Pfam Ankyrin repeats (3 copies) 359 449 IPR002110 GO:0005515
Lapu4g01196 533 Gene3D - 232 296 IPR036770 -
Lapu4g01196 533 PRINTS Ankyrin repeat signature 402 416 IPR002110 GO:0005515
Lapu4g01196 533 PRINTS Ankyrin repeat signature 299 314 IPR002110 GO:0005515
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat region circular profile. 235 259 - -
Lapu4g01196 533 Gene3D - 125 231 IPR036770 -
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat profile. 264 296 IPR002110 GO:0005515
Lapu4g01196 533 ProSiteProfiles Ankyrin repeat profile. 358 385 IPR002110 GO:0005515
Lapu4g01196 533 Pfam Ankyrin repeats (many copies) 158 204 IPR002110 GO:0005515
Lapu4g01196 533 Pfam Ankyrin repeats (many copies) 296 340 IPR002110 GO:0005515
Lapu4g01196 533 Gene3D - 355 486 IPR036770 -
Lapu4g01196 533 Gene3D - 297 354 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01196 Lapu-Chr4 28630261 28631939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01196 352 462 Ion Channels AT4G32500 31.532 1.08e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01196 - - gmx:100782444 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00411 1 14429919 14431502 Lapu4g01196 4 28630261 28631939 PCT