Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01190 ATGGGGACCAGAAAGGAAGAAGAGAGGAACGAGAAAATTATCAGAGGTCTCATGAAGCTTCCGCCGAATCGAAGATGTATCAACTGCAACAGCATGGGACCACAATATGTATGTACAAGCTTTTGGACATTCATTTGCATGACATGCAGTGGAATACACCGGGAGTTTACTCATCGTGTGAAGTCTGTCTCAATGGCAAAGTTCACTTCCCAAGAAGTCGATGCTCTTCAAAGTGGGGGTAACCAGCGTGCAAGGGAAACATATTTGAAAAATTGGGACTTCCAAAGGCAGCGATTGCCAGATAACAGCAATGTTGATAAAATAAGGGAATTTATAAAGAGTGTATATGTGGATGGAAGATATGCTGCAGTGAAGTCTTCAGAAAAGCCACCAAGAGATGCACAGAGTCCTGGGATTCATGAAGACGAGATTAGGCGTGCCAGTTCTTATCATTCATATTCTCAAAGTCCTCCATATGATTATCAATATGAGGATCGGAAGTATGGAAAGCAAGCAGCTGCACTTACCAGGAAGCCTGGTTCAGATAAAGCTAGATATGAAGGGAAAATATCTAGTATTATATATAGTCCTGGCCGCTTCAGTGATCATGCATATGATGACAGATTTGCAAATGAAGGATCTGGTCCAAGAATTTCTGACTTTTCTGTGTTTAGTGGTGGTGAACAATTCAAATCTGATGTTCAGTCTCCCAATTTCCATAAAGATAACAAGATTAGCAGTCCATCCTATCAGAGGCGTTCTGGTTCCAGTTCGAGTGAAGATGTGTGGTCCCAAGCAAGAAATGCATCTCTGGAAACTAATGTCAATGCCAAGAAAGATGCTGATGGAATTCTTCCTCCGCAGAGAACTGCATCAGCTCAATCAGCAGACAACAGATTTTCATCTTTGAGATCTTATAATTCTGGCAGTTTAGTTGATTTTTTCTCTGAACCAGTTCAACCATCAGAACCACTTCAGAATAAAGCATTTGGCATTCCACGACCACCTGGTCCTACAAGATCTGTTAGCATGGACCTCTCCAAGGCACCATTGGAATCTGCAGGATCATCTCAAGCTCCAACAGTGGATCTGTTTCAATCATCTTTTTCATCTGCGGTTCCAATTTTCAATGAGAATCAACTTACTCAAGCATCCCAACTTGCATCTATTGATCTTTTTGCCGATCTCTCTGAGGAGCCTTCTACTATAAACTCAAATGAAAAGGTACTAGATTTATCTGTCCCTAAAAATGAAGGATGGGCAACTTTTGATGTCCCTCAGAGCACCTCATCTACTGCACAAGTGGAAATTCCAGCCACTGTACCCTCAAGTGCTAAATCTTTAGAAGACAGATTTGATCCATTTTCCACCTCAAATGCAAACACGCAATGGCCATCTTTGGAATTTTCTAGTGTCAGTATACATTCTTCACTTGCATCTAATTTATGGCATGATGGTGTGTGGAATAGAGAAGAACAAGTTTCTGCTATGGCAGCAAACACTGAACCATGGAATGCATTTGAAGATTCCGGTGGCCATCATCCTGTGGATGCCTTTAGTCAAGGATTACAATTGAACAATTTGCCCTCAGCTGATAATCAAATTTTGGGATTAAGAGAGTCTGAGGGGTCCAAAATTGACAGCGTTGAAGGCATTGCCTCTGTTGGTGGATTTGATAATCATGACATCCCATCACATGTCAGTGGTTCAGCATATCCCCCACCCATGCTTCCTCCAGTGGGAGACATTCCACCTGTTGGAATGAAATGCAAATCAACTAATCCATTTGATTATCCTCTTGAATCTGATGTGGATCACAACAACATGTTTCTTGATATGAGCTCTTTGCAAGATGCACTGCCTGATGCCCTGTTTCCAACCTCCTTCCATAGTGGTATAGCTGAGTCTTGGCTTCCCCAAAACACGGTGGCTCCTTATATTTCCTCTTCTGGAGAAGGTGGTTTGTCATTCATGGCTGCGCAATCACCAGGTTCTCAAATACAGAACATCCAGACACCAGAACCGGTTGCTTCGTTTGGGGGAAATCCTTTTGCATAG 2058 0.4232 MGTRKEEERNEKIIRGLMKLPPNRRCINCNSMGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQSGGNQRARETYLKNWDFQRQRLPDNSNVDKIREFIKSVYVDGRYAAVKSSEKPPRDAQSPGIHEDEIRRASSYHSYSQSPPYDYQYEDRKYGKQAAALTRKPGSDKARYEGKISSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVFSGGEQFKSDVQSPNFHKDNKISSPSYQRRSGSSSSEDVWSQARNASLETNVNAKKDADGILPPQRTASAQSADNRFSSLRSYNSGSLVDFFSEPVQPSEPLQNKAFGIPRPPGPTRSVSMDLSKAPLESAGSSQAPTVDLFQSSFSSAVPIFNENQLTQASQLASIDLFADLSEEPSTINSNEKVLDLSVPKNEGWATFDVPQSTSSTAQVEIPATVPSSAKSLEDRFDPFSTSNANTQWPSLEFSSVSIHSSLASNLWHDGVWNREEQVSAMAANTEPWNAFEDSGGHHPVDAFSQGLQLNNLPSADNQILGLRESEGSKIDSVEGIASVGGFDNHDIPSHVSGSAYPPPMLPPVGDIPPVGMKCKSTNPFDYPLESDVDHNNMFLDMSSLQDALPDALFPTSFHSGIAESWLPQNTVAPYISSSGEGGLSFMAAQSPGSQIQNIQTPEPVASFGGNPFA* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01190 685 MobiDBLite consensus disorder prediction 134 148 - -
Lapu4g01190 685 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Lapu4g01190 685 PANTHER ARFGAP/RECO-RELATED 1 685 IPR044820 GO:0005096
Lapu4g01190 685 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Lapu4g01190 685 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Lapu4g01190 685 MobiDBLite consensus disorder prediction 232 275 - -
Lapu4g01190 685 MobiDBLite consensus disorder prediction 126 160 - -
Lapu4g01190 685 MobiDBLite consensus disorder prediction 232 297 - -
Lapu4g01190 685 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Lapu4g01190 685 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Lapu4g01190 685 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Lapu4g01190 685 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Lapu4g01190 685 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Lapu4g01190 685 CDD ArfGap_AGFG 11 123 - -
Lapu4g01190 685 SMART arf_gap_3 11 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01190 Lapu-Chr4 28583915 28591567 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01190 14 137 C2H2 Transcription Factor Family AT3G07940 32.090 1.73e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01190 K15044 - gmx:100788316 1148.65