Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01186 ATGGCGAGGAAGCGAAAACAGCCACCTCGTCCCGCTAAATCTGCAGAACCCCCTCTCAAACAGCAGCAACAACAACCCCAATTGAATATAGAAGAAGAGTATAAAGAAGAGGAACAATACGAAGAAGAAAGCGAAGAAATTGAAGAAGAATTAGCACCAAACAATGAAACCTCGAAGCCCACCTCCACATCTTCATCCTCTCCAAGCGACGACGAGGAGCCAATCCAGAACCTTCTAGAACCCCTTGGCAAGGATGAGATCGCGAGACTCCTCATGGAAGCCGCGTCCAAGCACCGCGACGTGGCGGACCGGATACGCCGCGCTGCAGACGCCGACCCCGCGCATCGCAAGATCTTCGTTCACGGCCTCGGCTGGGACACCACCGCCGACACCCTCGCCGCGGCGTTCTCCCCCTACGGCGACATCGAGGACTGCAAGGCCGTCACCGACAAGGCCACCGGCAAGTCCAAGGGCTATGGCTTCGTCCTCTTCAAGACCCGTCGCGCTGCCCGAAACGCGCTCCGCCAGCCGCAGAAAAGGATCGGCAACCGCACTGCCGCATGCCAGCTGGCGTCCGTGGGCCCAGTCCAGTCGTCGCCGGTGACGCTATCGACGGCGTCGGGGGCTTCAGATTTCTCGCAGAGGAAGATCTACGTGAGCAACGTGGGTGCGGAATTGGACCCGCAGAGGCTTCTGTCGTTTTTTGCGCAGTTTGGGGAGATTGAGGAAGGACCTTTAGGGCTTGATAAGGTAACTGGGAAACCGAAGGGATTCTGTTTGTTTGTTTATAAGAGTGTGGAGGGTGCAAAGCGGGCGTTGGAGGGGCCGCACAAGAAGTTTGAGGGGCATATTTTGCATTGCCAGAAGGCAATTGATGGTCCCAAGCAACAACAGCGAGTGGGGTTGGTGCAGGGTAGTTCTCAGAGTGGTGGGTTTGTTGGAATGGGAGCAGTGCCAATGCCAGGGCACTTGATGGCCCCGGCTGGGCCACCGGTAGGAGGAGGTGTAGTAGGTGCGGCAGTGCAGCCAGTTAACCCGGCAGTTGGGCAGGCACTGACGGCTTTGCTGGCATCTCGGGCTGCGGGGTTGCAACTGAATGGGTTGTTGGGGATTGGTTCACCGGGGACGAACACTGGCAGTTATGTTGGACAAGGTAGTGTGAATTCAGGTGGTGTTGGTGTTGGTGTTGGGGGATATGGTAATCAAATAGGGTTGCCGAGTTCATATGCAAGCCAGCAGCAGGTGGGGATAGGTGGATCTGGAAGAGTGCAGCAGCATCATGGTGTGGGACAGTATGGTGGCGTTGTGCCTTACATGGGCCACTAG 1326 0.5686 MARKRKQPPRPAKSAEPPLKQQQQQPQLNIEEEYKEEEQYEEESEEIEEELAPNNETSKPTSTSSSSPSDDEEPIQNLLEPLGKDEIARLLMEAASKHRDVADRIRRAADADPAHRKIFVHGLGWDTTADTLAAAFSPYGDIEDCKAVTDKATGKSKGYGFVLFKTRRAARNALRQPQKRIGNRTAACQLASVGPVQSSPVTLSTASGASDFSQRKIYVSNVGAELDPQRLLSFFAQFGEIEEGPLGLDKVTGKPKGFCLFVYKSVEGAKRALEGPHKKFEGHILHCQKAIDGPKQQQRVGLVQGSSQSGGFVGMGAVPMPGHLMAPAGPPVGGGVVGAAVQPVNPAVGQALTALLASRAAGLQLNGLLGIGSPGTNTGSYVGQGSVNSGGVGVGVGGYGNQIGLPSSYASQQQVGIGGSGRVQQHHGVGQYGGVVPYMGH* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01186 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 305 IPR000504 GO:0003723
Lapu4g01186 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 184 IPR000504 GO:0003723
Lapu4g01186 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 284 IPR000504 GO:0003723
Lapu4g01186 441 MobiDBLite consensus disorder prediction 34 51 - -
Lapu4g01186 441 Gene3D - 204 317 IPR012677 -
Lapu4g01186 441 MobiDBLite consensus disorder prediction 1 76 - -
Lapu4g01186 441 SUPERFAMILY RNA-binding domain, RBD 108 197 IPR035979 GO:0003676
Lapu4g01186 441 Coils Coil 438 441 - -
Lapu4g01186 441 MobiDBLite consensus disorder prediction 54 73 - -
Lapu4g01186 441 Gene3D - 21 199 IPR012677 -
Lapu4g01186 441 PANTHER GEO13361P1-RELATED 100 375 - -
Lapu4g01186 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 208 IPR000504 GO:0003723
Lapu4g01186 441 SMART rrm1_1 117 189 IPR000504 GO:0003723
Lapu4g01186 441 SMART rrm1_1 216 288 IPR000504 GO:0003723
Lapu4g01186 441 SUPERFAMILY RNA-binding domain, RBD 211 311 IPR035979 GO:0003676
Lapu4g01186 441 Coils Coil 30 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01186 Lapu-Chr4 28532546 28538249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01186 207 294 C2H2 Transcription Factor Family AT2G19380 35.227 4.82e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01186 K12741 - gmx:100784200 397.127