Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01181 ATGAGTGACTCACTTCACTTCAGGAATGGTGGTTGTAGGTTCACTGCTGAAATGAATTTTTTCCCTTCACCTCCTGTTACTGTTATTGGTCTGCAGCAGTGTTTCAACATGTTAGGTGTGATGAGTCGTGTTGGAGACATGGAATCTGAAAGTTCTGATGTACCCTTTCAGATTTTGAAGCCGGTGGTGATCAATCCCCAGGAGAAGGAAGAGGCTTCTTTTGGAGTTAAAGACATGAGCTTGTCTTTGAAACCTGGTGAAGAGCTTGAAGCTAATAGTTATTCTGTCACAGGGAAAATTAGGCACACTAAGCTTTGTGCCAGAGGACATTGGAGGCCAGCTGAAGATGTCAAACTTAAAGAGCTTGTTGCACAATTGGGACCTCAAAATTGGAACTCAATAGCTGAACATCTTCCAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATACTAGAATTAACCGAAAGGCTTTTAGTGAGGAAGAAGAGGAGAGACTCTTGAATGCTCAGAAAGTTTATGGTAATAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGAAGGCAAAGGGAGAAGTCATGTGTCTACAGAAGGAGAAAACCCACATTTCAGATCCGGCCACCAAAGGATTTGGTTTTGACCTTGCCCATGAATGGAGGCAGTGAATCAACCATTTCAAGCACCATCATTGATGAATCTGCCTCAACAGGAACTAACCTCTCCTTCACTCTCTCTTCAGCCAAACCAACTCCTACGCCTCACAACCATTATCCTGTTCAGAATCATCAAGCCTTTGGTGCTCTAATGGGTTCATCTGGAAAAAGCAGGACACAAGTCAGGGATGTGAGTTTTAACAAACATTTTGGTGATTGGAAAGGTTCATGTGAGGCTGGACACATGAGAAGGCTCAAGGGTGTGGACCAATCTCATTACTCAGATTCAAACTCATCAGAAGTTTCAGTATCTGAGTCAGTTACCACCAACAGGATTACCAATCTTTCAATGTATGGAAAAAGTGATAATAGGACCAACATGTTATTCATTGACTTTCTTGGAGTAGGAGCTACATAA 1131 0.4244 MSDSLHFRNGGCRFTAEMNFFPSPPVTVIGLQQCFNMLGVMSRVGDMESESSDVPFQILKPVVINPQEKEEASFGVKDMSLSLKPGEELEANSYSVTGKIRHTKLCARGHWRPAEDVKLKELVAQLGPQNWNSIAEHLPGRSGKSCRLRWFNQLDTRINRKAFSEEEEERLLNAQKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVYRRRKPTFQIRPPKDLVLTLPMNGGSESTISSTIIDESASTGTNLSFTLSSAKPTPTPHNHYPVQNHQAFGALMGSSGKSRTQVRDVSFNKHFGDWKGSCEAGHMRRLKGVDQSHYSDSNSSEVSVSESVTTNRITNLSMYGKSDNRTNMLFIDFLGVGAT* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01181 376 CDD SANT 111 152 IPR001005 -
Lapu4g01181 376 Pfam Myb-like DNA-binding domain 160 203 IPR001005 -
Lapu4g01181 376 Pfam Myb-like DNA-binding domain 108 154 IPR001005 -
Lapu4g01181 376 PANTHER MYB PROTEIN-RELATED 108 295 - -
Lapu4g01181 376 SUPERFAMILY Homeodomain-like 108 201 IPR009057 -
Lapu4g01181 376 CDD SANT 162 202 IPR001005 -
Lapu4g01181 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 158 IPR017930 -
Lapu4g01181 376 Gene3D - 108 159 - -
Lapu4g01181 376 ProSiteProfiles Myb-like domain profile. 155 205 IPR001005 -
Lapu4g01181 376 Gene3D - 161 224 - -
Lapu4g01181 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 159 209 IPR017930 -
Lapu4g01181 376 SMART sant 107 156 IPR001005 -
Lapu4g01181 376 SMART sant 159 207 IPR001005 -
Lapu4g01181 376 FunFam MYB transcription factor 108 159 - -
Lapu4g01181 376 ProSiteProfiles Myb-like domain profile. 108 154 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01181 Lapu-Chr4 28479869 28482230 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01181 107 227 MYB Transcription Factor Family AT1G69560 76.860 5.61e-65 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu4g01181 Myb_DNA-binding 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01181 K09422 - gmx:100791795 341.658