Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g01180 ATGAGCAACTCACTACACTTCAGGAATGGTGGTTGTGGTTTCAGTGCTGAAATTAATGTTTTCCCTTCACCTCCTGTTCCTGTTCTTGCTCTCCGGTGTTCAAACACTTTGGGGTTCATGGCTCAGGTTGGAGGCCCAGAATCTGAAAGTTCTGGCATGCCCTTCAAGAATTCGAAATCCTTGGTGATCCAATCCCAGGAGGAGCAAGAAGAAGAATCTTTTGGGGTTGAGAAGACGAGTTTGTCTTTGAAACACGGTGAAGTGTTTGAGGCTAATTGTTCTTCTGCCACAGGAAAAATTAGACACACTAAGCTTTGTGCCAGAGGACATTGGAGGCCAGTTGAAGATGCCAAACTTAAAGAGCTTGTTGCACAATTTGGACCTCAAAATTGGAATTCTATAGCAGAACATCTTCCAGGAAGATCAGGCAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAGGAAAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAGAAGTCATGTGTCTACAGAAGGAGAAAGCCCACATTTCAGATCCTGCCACCAAAGGATTTGGTTTTGACCTTGCCAATGAATGGAGGCAGTGAAACAACAATTTCAGGCACCATCATTGACGAATCTGCCTCAACAGGAACTAACTTCTCCTTCACTACCTCTTCAGCTAAACCAACTCCTATGCCTTTTCACAAGAGTTGTCCTGTTCAGAATCTCCAAATCTTTGGTGCTCTGATGGGTTTATCTGGAGAAAGCAGAACACCAGCTATGGATGTGGGTTTCAGCATGCATTTTGGTGCTTGGAAAGGTACATGTGAGGCTGGACAGATGGGAAGGCTAATGGGTGTGGACCAATCCCATTATTCAGAGTCAAACTCATCAGAAGTTTCAGTATCAGAGTCAGTTGTCACCAACAAGACTACCAATCTCTCAATTTCTGGGGAAAATGAAAACATGGGTGATAACAAGGCCAACATGATATTTATTGACTTTCTTGGAGTAGGAGCTGCATAA 1146 0.4363 MSNSLHFRNGGCGFSAEINVFPSPPVPVLALRCSNTLGFMAQVGGPESESSGMPFKNSKSLVIQSQEEQEEESFGVEKTSLSLKHGEVFEANCSSATGKIRHTKLCARGHWRPVEDAKLKELVAQFGPQNWNSIAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVYRRRKPTFQILPPKDLVLTLPMNGGSETTISGTIIDESASTGTNFSFTTSSAKPTPMPFHKSCPVQNLQIFGALMGLSGESRTPAMDVGFSMHFGAWKGTCEAGQMGRLMGVDQSHYSESNSSEVSVSESVVTNKTTNLSISGENENMGDNKANMIFIDFLGVGAA* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g01180 381 ProSiteProfiles Myb-like domain profile. 108 154 IPR001005 -
Lapu4g01180 381 SMART sant 107 156 IPR001005 -
Lapu4g01180 381 SMART sant 159 207 IPR001005 -
Lapu4g01180 381 PANTHER MYB PROTEIN-RELATED 108 329 - -
Lapu4g01180 381 CDD SANT 111 152 IPR001005 -
Lapu4g01180 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 154 IPR017930 -
Lapu4g01180 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 209 IPR017930 -
Lapu4g01180 381 Pfam Myb-like DNA-binding domain 160 203 IPR001005 -
Lapu4g01180 381 Pfam Myb-like DNA-binding domain 108 154 IPR001005 -
Lapu4g01180 381 CDD SANT 162 202 IPR001005 -
Lapu4g01180 381 Gene3D - 161 220 - -
Lapu4g01180 381 FunFam MYB transcription factor 108 159 - -
Lapu4g01180 381 Gene3D - 108 159 - -
Lapu4g01180 381 ProSiteProfiles Myb-like domain profile. 155 205 IPR001005 -
Lapu4g01180 381 SUPERFAMILY Homeodomain-like 108 201 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g01180 Lapu-Chr4 28470178 28472489 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g01180 107 227 MYB Transcription Factor Family AT1G69560 77.686 6.92e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu4g01180 Myb_DNA-binding 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g01180 K09422 - jre:109000849 340.502